Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation (Q24675776)

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Zhaolei Zhang

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Nicholas Carriero

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Philip Cayting

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Paul Harrrison

Gene losses during human origins

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language of work or name

English

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publication date

January 2007

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published in

Nucleic Acids Research

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volume

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issue

Database issue

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page(s)

D55-60

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cites work

1 reference

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7 April 2017

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Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability

7 April 2017

1 reference

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HOPPSIGEN: a database of human and mouse processed pseudogenes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

7 April 2017

1 reference

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Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

UniProt: the Universal Protein knowledgebase

7 April 2017

1 reference

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A genome-wide survey of human pseudogenes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates

7 April 2017

1 reference

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Of mice and men: phylogenetic footprinting aids the discovery of regulatory elements

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Identification of pseudogenes in the Drosophila melanogaster genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Reevaluating human gene annotation: a second-generation analysis of chromosome 22

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

The human genome browser at UCSC

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Organization of heterogeneous scientific data using the EAV/CR representation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Identification and characterization of over 100 mitochondrial ribosomal protein pseudogenes in the human genome☆

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

A computational approach for identifying pseudogenes in the ENCODE regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Millions of years of evolution preserved: a comprehensive catalog of the processed pseudogenes in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Integrated pseudogene annotation for human chromosome 22: evidence for transcription

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Ensembl: a genome infrastructure

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Large-scale analysis of pseudogenes in the human genome

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Comparative analysis of processed pseudogenes in the mouse and human genomes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

Patterns of nucleotide substitution, insertion and deletion in the human genome inferred from pseudogenes

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1669708

PseudoPipe: an automated pseudogene identification pipeline

28 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKL851

The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKL851

Reconstructing genetic networks in yeast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17099229

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL851

1 reference

journals/nar/KarroYZZCCHG07

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

17099229

1 reference