WebGeSTer DB—a transcription terminator database (Q24607527)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

9 August 2024

nucleic acid database

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

9 August 2024

Debnath Pal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

9 August 2024

author name string

Anirban Mitra

series ordinal

0 references

Valakunja Nagaraja

series ordinal

0 references

Anil K. Kesarwani

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

9 August 2024

language of work or name

English

0 references

publication date

January 2011

0 references

23 October 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

full work available at URL

9 August 2024

https://academic.oup.com/nar/article-pdf/39/suppl_1/D129/18788630/gkq971.pdf

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20972211/pdf/?tool=EBI

9 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

http://nar.oxfordjournals.org/cgi/content/abstract/39/suppl_1/D129

9 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

http://nar.oxfordjournals.org/cgi/content/full/39/suppl_1/D129

9 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

http://nar.oxfordjournals.org/cgi/reprint/39/suppl_1/D129.pdf

9 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20972211/?tool=EBI

9 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

https://europepmc.org/articles/PMC3013805

9 August 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

https://europepmc.org/articles/PMC3013805?pdf=render

9 August 2024

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A20972211

http://academic.oup.com/nar/article-pdf/39/suppl_1/D129/18788630/gkq971.pdf

9 August 2024

https://api.crossref.org/works/10.1093/NAR/GKQ971

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

9 August 2024

published in

Nucleic Acids Research

0 references

volume

0 references

issue

Database issue

0 references

page(s)

D129-35

0 references

start time

14 November 2016

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

Implications of high level pseudogene transcription in Mycobacterium leprae

1 reference

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Prediction of transcriptional terminators in Bacillus subtilis and related species

7 April 2017

1 reference

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Transcription termination at intrinsic terminators: the role of the RNA hairpin

7 April 2017

1 reference

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Transcription termination and the regulation of gene expression

7 April 2017

1 reference

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An Allosteric Path to Transcription Termination

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

RNA polymerase: the vehicle of transcription

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Direct spectroscopic study of reconstituted transcription complexes reveals that intrinsic termination is driven primarily by thermodynamic destabilization of the nucleic acid framework

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Analysis of gene expression in operons of Streptomyces coelicolor

27 September 2017

1 reference

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Rho-dependent transcription termination: more questions than answers

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Rho-dependent termination and ATPases in transcript termination

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Conserved economics of transcription termination in eubacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Prediction of rho-independent transcriptional terminators in Escherichia coli

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

A general model for nucleic acid helicases and their "coupling" within macromolecular machines

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Pausing by bacterial RNA polymerase is mediated by mechanistically distinct classes of signals

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Transcription termination control in bacteria

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

The mechanism of intrinsic transcription termination.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Rho-independent terminators without 3' poly-U tails from the early region of actinophage øC31.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Optimization of gene expression in Streptomyces lividans by a transcription terminator

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Control of transcription termination in prokaryotes

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Archaeal intrinsic transcription termination in vivo

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3013805

Occurrence, divergence and evolution of intrinsic terminators across eubacteria

30 May 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ971

Genome-wide analysis of the intrinsic terminators of transcription across the genus Mycobacterium

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ971

Alternate paradigm for intrinsic transcription termination in eubacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ971

Experimental analysis of Helicobacter pylori transcriptional terminators suggests this microbe uses both intrinsic and factor-dependent termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ971

Determination of intrinsic transcription termination efficiency by RNA polymerase elongation rate

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20972211

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ971

1 reference

DBLP publication ID

journals/nar/MitraKPN11

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

1 reference