Metagenomic microbial community profiling using unique clade-specific marker genes (Q24599864)

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English	Metagenomic microbial community profiling using unique clade-specific marker genes	scientific article

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instance of

scholarly article

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title

Metagenomic microbial community profiling using unique clade-specific marker genes (English)

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main subject

cell biology

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metagenomics

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based on heuristic

inferred from title

author

Curtis Huttenhower

series ordinal

6

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Vagheesh Narasimhan

object named as

Vagheesh Narasimhan

series ordinal

4

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Nicola Segata

object named as

Nicola Segata

series ordinal

1

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Olivier Jousson

object named as

Olivier Jousson

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5

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Levi Waldron

object named as

Levi Waldron

series ordinal

2

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Annalisa Ballarini

series ordinal

3

object named as

Annalisa Ballarini

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language of work or name

English

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publication date

August 2012

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published in

Nature Methods

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volume

9

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issue

8

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page(s)

811-4

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cites work

Integrative analysis of environmental sequences using MEGAN4

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

A human gut microbial gene catalogue established by metagenomic sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

KEGG for representation and analysis of molecular networks involving diseases and drugs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

A core gut microbiome in obese and lean twins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

Mapping short DNA sequencing reads and calling variants using mapping quality scores

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

MEGAN analysis of metagenomic data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

PhymmBL expanded: confidence scores, custom databases, parallelization and more

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

Vaginal microbiome of reproductive-age women

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

The integrated microbial genomes system: an expanding comparative analysis resource

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

Basic local alignment search tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

24 March 2017

Enterotypes of the human gut microbiome

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038/NMETH.2066

retrieved

22 April 2017

A simple, fast, and accurate method of phylogenomic inference

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038/NMETH.2066

retrieved

22 April 2017

Search and clustering orders of magnitude faster than BLAST

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

7 April 2017

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

7 April 2017

NCBI Reference Sequences: current status, policy and new initiatives

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

7 April 2017

Toward an efficient method of identifying core genes for evolutionary and functional microbial phylogenies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Classifying short genomic fragments from novel lineages using composition and homology.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Taxonomic classification of metagenomic shotgun sequences with CARMA3.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

NBC: the Naïve Bayes Classification tool webserver for taxonomic classification of metagenomic reads

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Accurate phylogenetic classification of variable-length DNA fragments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Molecular identification of bacteria associated with bacterial vaginosis.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

The metagenomics of soil

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Microbial community genomics in the ocean

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

27 September 2017

Taxonomic metagenome sequence assignment with structured output models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

30 May 2018

Aligning short reads to reference alignments and trees

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

28 November 2018

A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

28 November 2018

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3443552

retrieved

28 November 2018

A framework for human microbiome research

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNMETH.2066

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Metagenome fragment classification using N-mer frequency profiles

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNMETH.2066

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

RAIphy: Phylogenetic classification of metagenomics samples using iterative refinement of relative abundance index profiles

1 reference

stated in

Crossref

reference URL

https://api.crossref.org/works/10.1038%2FNMETH.2066

retrieved

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

DOI

10.1038/NMETH.2066

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

151094

Dimensions Publication ID

1010611135

0 references

OpenCitations bibliographic resource ID

151094

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

151094

PMC publication ID

3443552

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

151094

PubMed publication ID

22688413

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

151094

ResearchGate publication ID

225296298

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