Phosphorylation-dependent regulation of plant chromatin and chromatin-associated proteins. (Q38216962)

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scientific article published on 10 July 2014

Language	Label	Description	Also known as
English	Phosphorylation-dependent regulation of plant chromatin and chromatin-associated proteins.	scientific article published on 10 July 2014

Statements

scholarly article

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19 March 2020

Phosphorylation-dependent regulation of plant chromatin and chromatin-associated proteins (English)

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19 March 2020

phosphorylation

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based on heuristic

inferred from title

Delphine Pflieger

3

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19 March 2020

4

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19 March 2020

author name string

Jean Bigeard

1

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19 March 2020

Naganand Rayapuram

2

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19 March 2020

publication date

10 July 2014

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19 March 2020

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19 March 2020

14

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19 March 2020

19

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19 March 2020

2127-2140

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19 March 2020

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Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

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Plant PP2C phosphatases: emerging functions in stress signaling

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Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

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Weak functional constraints on phosphoproteomes

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Nucleocytoplasmic transport: taking an inventory

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Activation mechanism of the MAP kinase ERK2 by dual phosphorylation

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Linear motifs: evolutionary interaction switches.

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Linear Motif Atlas for Phosphorylation-Dependent Signaling

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Plant phosphopeptide-binding proteins as signaling mediators

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The regulation of protein function by multisite phosphorylation--a 25 year update

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Multisite phosphorylation provides sophisticated regulation of transcription factors

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A mechanism for cell-cycle regulation of MAP kinase signaling in a yeast differentiation pathway

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Mechanism of activation of ERK2 by dual phosphorylation

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MYBL2 is a substrate of GSK3-like kinase BIN2 and acts as a corepressor of BES1 in brassinosteroid signaling pathway in Arabidopsis

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Evolution and functional cross-talk of protein post-translational modifications

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High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates.

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The reverse in-gel kinase assay to profile physiological kinase substrates

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MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays

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KESTREL: a powerful method for identifying the physiological substrates of protein kinases

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A novel method to identify protein kinase substrates: eEF2 kinase is phosphorylated and inhibited by SAPK4/p38delta

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21 January 2018

Deciphering the plant phosphoproteome: tools and strategies for a challenging task

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Phosphoproteins analysis in plants: a proteomic approach

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Proteomic analysis of phosphorylated proteins

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Plant phosphoproteomics: an update

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Plant phosphoproteomics: a long road ahead

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21 January 2018

Profiling the kinome: current capabilities and future challenges

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Proteomics approaches to understand protein phosphorylation in pathway modulation

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Constitutively active mitogen-activated protein kinase versions reveal functions of Arabidopsis MPK4 in pathogen defense signaling.

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Phosphorylation of the Pro-X-Thr-Pro site in phosphatase inhibitor-2 by cyclin-dependent protein kinase during M-phase of the cell cycle

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21 January 2018

New Structural Insights into Phosphorylation-free Mechanism for Full Cyclin-dependent Kinase (CDK)-Cyclin Activity and Substrate Recognition

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21 January 2018

A curated compendium of phosphorylation motifs

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Deciphering protein kinase specificity through large-scale analysis of yeast phosphorylation site motifs

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Quantitative Phosphoproteomics of Early Elicitor Signaling inArabidopsis

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Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses

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21 January 2018

In planta changes in protein phosphorylation induced by the plant hormone abscisic acid

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Quantitative plant phosphoproteomics

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Phosphoproteomics perspective on plant signal transduction and tyrosine phosphorylation

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Shotguns in the front line: phosphoproteomics in plants.

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21 January 2018

Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography

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21 January 2018

Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer.

1 reference

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21 January 2018

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

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21 January 2018

Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase.

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21 January 2018

Comparative phosphoproteome profiling reveals a function of the STN8 kinase in fine-tuning of cyclic electron flow (CEF)

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21 January 2018

Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana

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21 January 2018

Characterization and Prediction of Protein Phosphorylation Hotspots in Arabidopsis thaliana

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Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

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Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer.

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Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments

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Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism

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Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana.

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Plant nuclear proteomics--inside the cell maestro.

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Recent advances in maize nuclear proteomic studies reveal histone modifications

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PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor

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Arabidopsis nucleolar protein database (AtNoPDB)

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Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions

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Current status of the plant phosphorylation site database PhosPhAt and its use as a resource for molecular plant physiology

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Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification

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Chromatin modifications and their function

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Multivalent engagement of chromatin modifications by linked binding modules

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Chromosomal histone modification patterns--from conservation to diversity

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A plant dialect of the histone language

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Phosphorylation of histone H3 in plants--a dynamic affair.

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Aurora kinase is required for chromosome segregation in tobacco BY-2 cells

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AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis.

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Identification and characterization of plant Haspin kinase as a histone H3 threonine kinase

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Aurora1 phosphorylation activity on histone H3 and its cross-talk with other post-translational histone modifications in Arabidopsis.

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Identification and dynamics of two classes of aurora-like kinases in Arabidopsis and other plants

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Characterization of plant Aurora kinases during mitosis

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The dynamics of histone H1 function in chromatin

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Nuclear functions of the HMG proteins

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SWI/SNF chromatin remodeling and linker histones in plants

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Open and closed: the roles of linker histones in plants and animals.

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High mobility group proteins of the plant HMGB family: dynamic chromatin modulators

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Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation

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Gibberellin promotes histone H1 kinase activity and the expression of cdc2 and cyclin genes during the induction of rapid growth in deepwater rice internodes

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Post-translational modifications of the linker histone variants and their association with cell mechanisms.

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The HMG-box: a versatile protein domain occurring in a wide variety of DNA-binding proteins

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Plant proteins containing high mobility group box DNA-binding domains modulate different nuclear processes

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The maize HMGA protein is localized to the nucleolus and can be acetylated in vitro at its globular domain, and phosphorylation by CDK reduces its binding activity to AT-rich DNA.

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Interactions of the basic N-terminal and the acidic C-terminal domains of the maize chromosomal HMGB1 protein

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Specificity of the stimulatory interaction between chromosomal HMGB proteins and the transcription factor Dof2 and its negative regulation by protein kinase CK2-mediated phosphorylation

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Nucleocytoplasmic distribution of the Arabidopsis chromatin-associated HMGB2/3 and HMGB4 proteins

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21 January 2018

The biology of chromatin remodeling complexes

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21 January 2018

Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination

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21 January 2018

Remodelling chromatin to shape development of plants

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Plant DNA methyltransferases.

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Methylation and demethylation of the Arabidopsis genome

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21 January 2018

Diversity of Polycomb group complexes in plants: same rules, different players?

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21 January 2018

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

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Histone acetyltransferases in rice (Oryza sativa L.): phylogenetic analysis, subcellular localization and expression

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Histone deacetylases and their functions in plants

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21 January 2018

Coordinated histone modifications are associated with gene expression variation within and between species

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21 January 2018

Characterization of a phosphatase 2C protein as an interacting partner of the histone acetyltransferase GCN5 in Arabidopsis.

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21 January 2018

Phosphorylation of a WRKY transcription factor by two pathogen-responsive MAPKs drives phytoalexin biosynthesis in Arabidopsis.

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21 January 2018

Dual-level regulation of ACC synthase activity by MPK3/MPK6 cascade and its downstream WRKY transcription factor during ethylene induction in Arabidopsis

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21 January 2018

A direct docking mechanism for a plant GSK3-like kinase to phosphorylate its substrates

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21 January 2018

The GSK3-like kinase BIN2 phosphorylates and destabilizes BZR1, a positive regulator of the brassinosteroid signaling pathway in Arabidopsis

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21 January 2018

Brassinosteroid signal transduction: clarifying the pathway from ligand perception to gene expression

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21 January 2018

Brassinosteroid Signal Transduction: A Mix of Conservation and Novelty.

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21 January 2018

The degradation of HFR1, a putative bHLH class transcription factor involved in light signaling, is regulated by phosphorylation and requires COP1.

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21 January 2018

Multisite phosphorylation of Arabidopsis HFR1 by casein kinase II and a plausible role in regulating its degradation rate

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21 January 2018

The VirD2 pilot protein of Agrobacterium-transferred DNA interacts with the TATA box-binding protein and a nuclear protein kinase in plants

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21 January 2018

Emerging roles for RNA polymerase II CTD in Arabidopsis

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21 January 2018

Pea DNA topoisomerase I is phosphorylated and stimulated by casein kinase 2 and protein kinase C.

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21 January 2018

Immunodetection of retinoblastoma-related protein and its phosphorylated form in interphase and mitotic alfalfa cells

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21 January 2018

Condensin, cohesin and the control of chromatin states.

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21 January 2018

Condensin and cohesin knockouts in Arabidopsis exhibit a titan seed phenotype

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21 January 2018

Rec8 phosphorylation and recombination promote the step-wise loss of cohesins in meiosis.

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21 January 2018

Cryptochrome Structure and Signal Transduction

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21 January 2018

Arabidopsis cryptochrome 2 completes its posttranslational life cycle in the nucleus.

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21 January 2018

Functional architecture in the cell nucleus

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https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Plant nuclear bodies

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https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

The age of crosstalk: phosphorylation, ubiquitination, and beyond

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

In vitro phosphorylation of histone H3 at threonine 3 by Arabidopsis haspin is strongly influenced by posttranslational modifications of adjacent amino acids.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Distinctive core histone post-translational modification patterns in Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

SUMO-, MAPK-, and resistance protein-signaling converge at transcription complexes that regulate plant innate immunity.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Quantitative proteomics reveals factors regulating RNA biology as dynamic targets of stress-induced SUMOylation in Arabidopsis

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Identification of O-linked β-D-N-acetylglucosamine-modified proteins from Arabidopsis

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

The next level of complexity: crosstalk of posttranslational modifications.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

The top-down, middle-down, and bottom-up mass spectrometry approaches for characterization of histone variants and their post-translational modifications

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

ChIP-seq: advantages and challenges of a maturing technology

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Purification of proteins associated with specific genomic Loci

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Mass spectrometry-based identification of proteins interacting with nucleic acids

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Downstream nuclear events in brassinosteroid signalling

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

BES1 Accumulates in the Nucleus in Response to Brassinosteroids to Regulate Gene Expression and Promote Stem Elongation

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400073

21 January 2018

Identifiers

10.1002/PMIC.201400073

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24889195%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24889195%20AND%20SRC:MED&resulttype=core&format=json

19 March 2020

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