Tb3+-Cleavage Assays Reveal Specific Mg2+ Binding Sites Necessary to Pre-fold the btuB Riboswitch for AdoCbl Binding (Q37712492)

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scientific article published on 21 March 2017

Language	Label	Description	Also known as
English	Tb3+-Cleavage Assays Reveal Specific Mg2+ Binding Sites Necessary to Pre-fold the btuB Riboswitch for AdoCbl Binding	scientific article published on 21 March 2017

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Tb3+-Cleavage Assays Reveal Specific Mg2+ Binding Sites Necessary to Pre-fold the btuB Riboswitch for AdoCbl Binding (English)

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

author name string

Pallavi K Choudhary

1

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

Sofia Gallo

2

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Europe PubMed Central

PMC publication ID

22 August 2017

Roland K O Sigel

3

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Europe PubMed Central

PMC publication ID

22 August 2017

publication date

21 March 2017

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Europe PubMed Central

PMC publication ID

22 August 2017

Frontiers in Chemistry

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Europe PubMed Central

PMC publication ID

22 August 2017

5

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Europe PubMed Central

PMC publication ID

22 August 2017

10

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

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ImageQuant

2 references

Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5359240/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Mg(2+)-induced conformational changes in the btuB riboswitch from E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Single-molecule studies of the lysine riboswitch reveal effector-dependent conformational dynamics of the aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Structural insights into ligand binding and gene expression control by an adenosylcobalamin riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

B12 cofactors directly stabilize an mRNA regulatory switch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

MINAS--a database of Metal Ions in Nucleic AcidS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

A trans-acting riboswitch controls expression of the virulence regulator PrfA in Listeria monocytogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

The structural and functional diversity of metabolite-binding riboswitches

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Crystal structure of the lysine riboswitch regulatory mRNA element

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Riboswitches: emerging themes in RNA structure and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Probing RNA structure and metal-binding sites using terbium(III) footprinting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

In-line probing analysis of riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Structural basis of glmS ribozyme activation by glucosamine-6-phosphate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Evidence for preorganization of the glmS ribozyme ligand binding pocket

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Metal ions and RNA folding: a highly charged topic with a dynamic future

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Riboswitches exert genetic control through metabolite-induced conformational change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Gene regulation by riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Control of gene expression by a natural metabolite-responsive ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Thiamine-regulated gene expression of Aspergillus oryzae thiA requires splicing of the intron containing a riboswitch-like domain in the 5'-UTR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Genetic control by metabolite-binding riboswitches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Outersphere and innersphere coordinated metal ions in an aminoacyl-tRNA synthetase ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Sensing Small Molecules by Nascent RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Thiamine derivatives bind messenger RNAs directly to regulate bacterial gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Genetic control by a metabolite binding mRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Metal ions in the structure and function of RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Adenosylcobalamin inhibits ribosome binding to btuB RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Tertiary Motifs in RNA Structure and Folding

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

On the role of magnesium ions in RNA stability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Altered binding and transport of vitamin B12 resulting from insertion mutations in the Escherichia coli btuB gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 August 2017

Methods to detect and characterize metal ion binding sites in RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

6 September 2017

Molecular insights into the ligand-controlled organization of the SAM-I riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

6 September 2017

New insights into riboswitch regulation mechanisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

6 September 2017

Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

6 September 2017

Probing the environment of lanthanide binding sites in yeast tRNA(Phe) by specific metal-ion-promoted cleavages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

23 June 2018

Monitoring global structural changes and specific metal-ion-binding sites in RNA by in-line probing and Tb(III) cleavage.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

1 September 2018

The corrin moiety of coenzyme B12 is the determinant for switching the btuB riboswitch of E. coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

1 September 2018

A kinetic intermediate that regulates proper folding of a group II intron RNA.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

1 September 2018

Terbium-mediated footprinting probes a catalytic conformational switch in the antigenomic hepatitis delta virus ribozyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

1 September 2018

Conservation of helical structure contributes to functional metal ion interactions in the catalytic domain of ribonuclease P RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

1 September 2018

Probing non-selective cation binding in the hairpin ribozyme with Tb(III).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5359240

1 September 2018

Metal ion binding sites in a group II intron core

1 reference

https://pubmed.ncbi.nlm.nih.gov/28377919

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Lanthanide ions as probes for metal ions in the structure and catalytic mechanism of ribozymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/28377919

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing Ribosome Structure by Europium-Induced RNA Cleavage

1 reference

https://pubmed.ncbi.nlm.nih.gov/28377919

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transport of vitamin B12 in Escherichia coli. Some observations on the roles of the gene products of BtuC and TonB

1 reference

https://pubmed.ncbi.nlm.nih.gov/28377919

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sensing small molecules by nascent RNA: a mechanism to control transcription in bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/28377919

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.3389/FCHEM.2017.00010

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

22 August 2017

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