In Vitro Chromatin Assembly: Strategies and Quality Control. (Q37397394)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27372747%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

In Vitro Chromatin Assembly: Strategies and Quality Control (English)

1 reference

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17 March 2020

0 references

1 reference

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17 March 2020

U Muthurajan

1 reference

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17 March 2020

S Bergeron

1 reference

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17 March 2020

K Zhou

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17 March 2020

Y Gu

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17 March 2020

S Chakravarthy

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17 March 2020

P Dyer

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17 March 2020

T Irving

1 reference

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17 March 2020

K Luger

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17 March 2020

language of work or name

English

0 references

publication date

19 February 2016

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17 March 2020

published in

Methods in Enzymology

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17 March 2020

volume

573

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17 March 2020

page(s)

3-41

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Bivalent interaction of the PZP domain of BRPF1 with the nucleosome impacts chromatin dynamics and acetylation

17 March 2020

cites work

1 reference

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Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.

6 September 2017

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Histone core phosphorylation regulates DNA accessibility

6 September 2017

1 reference

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Chromosomes. CENP-C reshapes and stabilizes CENP-A nucleosomes at the centromere.

6 September 2017

1 reference

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New developments in the ATSAS program package for small-angle scattering data analysis

6 September 2017

1 reference

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Single molecule fluorescence methodologies for investigating transcription factor binding kinetics to nucleosomes and DNA.

6 September 2017

1 reference

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Automodification switches PARP-1 function from chromatin architectural protein to histone chaperone

6 September 2017

1 reference

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Mechanisms underlying nucleosome positioning in vivo

6 September 2017

1 reference

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Scm3 deposits a (Cse4-H4)2 tetramer onto DNA through a Cse4-H4 dimer intermediate

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Microsecond barrier-limited chain collapse observed by time-resolved FRET and SAXS.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Molecular functions of the TLE tetramerization domain in Wnt target gene repression

6 September 2017

1 reference

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Sub-millisecond time-resolved SAXS using a continuous-flow mixer and X-ray microbeam

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Chaperone Nap1 shields histone surfaces used in a nucleosome and can put H2A-H2B in an unconventional tetrameric form.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Stability of nucleosomes containing homogenously ubiquitylated H2A and H2B prepared using semisynthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Alternative modes of binding of poly(ADP-ribose) polymerase 1 to free DNA and nucleosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structure and Scm3-mediated assembly of budding yeast centromeric nucleosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

The linker region of macroH2A promotes self-association of nucleosomal arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

The Histone Chaperone FACT: Structural Insights and Mechanisms for Nucleosome Reorganization

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2–nucleosome complexes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Nucleosome structural studies

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Binding of the Rett syndrome protein, MeCP2, to methylated and unmethylated DNA and chromatin.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Unique physical properties and interactions of the domains of methylated DNA binding protein 2.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structural characterization of H3K56Q nucleosomes and nucleosomal arrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Using atomic force microscopy to study chromatin structure and nucleosome remodeling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structural characterization of histone H2A variants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structural characterization of the histone variant macroH2A.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Modeling analytical ultracentrifugation experiments with an adaptive space-time finite element solution of the Lamm equation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structural determinants for generating centromeric chromatin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Reconstitution of nucleosome core particles from recombinant histones and DNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Crystal structures of histone Sin mutant nucleosomes reveal altered protein-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Structure of the yeast nucleosome core particle reveals fundamental changes in internucleosome interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Analysis of transport experiments using pseudo-absorbance data.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Crystal structure of the nucleosome core particle at 2.8 Å resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

VMD: visual molecular dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Fluorescence studies of the interaction of nucleotides with the active site of the nuclease of Staphylococcus aureus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

A quantitative investigation of linker histone interactions with nucleosomes and chromatin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Preparation of nucleosome core particle from recombinant histones

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Chromatin imaging with time-lapse atomic force microscopy

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Assembly of nucleosomal arrays from recombinant core histones and nucleosome positioning DNA.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

OligoCalc: an online oligonucleotide properties calculator.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

AFM studies in diverse ionic environments of nucleosomes reconstituted on the 601 positioning sequence

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

Sedimentation velocity analysis of highly heterogeneous systems

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

A new fluorescence resonance energy transfer approach demonstrates that the histone variant H2AZ stabilizes the histone octamer within the nucleosome

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5098222

The histone variant macro-H2A preferentially forms "hybrid nucleosomes"

2 September 2018

1 reference

12 December 2020

Quantifying chromatin-associated interactions: the HI-FI system

1 reference

12 December 2020

Nucleosome core particles containing a poly(dA.dT) sequence element exhibit a locally distorted DNA structure

1 reference

12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

12 December 2020

10.1016/BS.MIE.2016.01.002

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27372747%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27372747%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

PubMed publication ID

27372747

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27372747%20AND%20SRC:MED&resulttype=core&format=json