The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects (Q36262557)

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English	The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects	scientific article

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scholarly article

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13 August 2017

The development of an Arabidopsis model system for genome-wide analysis of polyploidy effects (English)

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13 August 2017

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Joseph Christopher Pires

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J Chris Pires

13

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Matt Vaughn

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Robert Anthony Martienssen

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Robert A Martienssen

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Vincent Colot

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author name string

Z Jeffrey Chen

1

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13 August 2017

Jianlin Wang

2

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13 August 2017

Lu Tian

3

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13 August 2017

Hyeon-Se Lee

4

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13 August 2017

Jiyuan J Wang

5

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13 August 2017

Meng Chen

6

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Jinsuk J Lee

7

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13 August 2017

Caroline Josefsson

8

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13 August 2017

Andreas Madlung

9

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13 August 2017

Brian Watson

10

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13 August 2017

Zach Lippman

11

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R W Doerge

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Thomas C Osborn

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publication date

1 August 2004

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Biological Journal of the Linnean Society

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82

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13 August 2017

4

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13 August 2017

689-700

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13 August 2017

Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2136415

30 September 2017

Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2136415

30 September 2017

Role of transposable elements in heterochromatin and epigenetic control

1 reference

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30 September 2017

Chloroplast DNA indicates a single origin of the allotetraploid Arabidopsis suecica

1 reference

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30 September 2017

FISH analysis of meiosis in Arabidopsis allopolyploids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2136415

30 September 2017

Trans allele methylation and paramutation-like effects in mice.

1 reference

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30 September 2017

Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing

1 reference

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30 September 2017

Understanding mechanisms of novel gene expression in polyploids

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30 September 2017

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

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30 September 2017

Beyond the Arabidopsis genome: opportunities for comparative genomics

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30 September 2017

Design issues for cDNA microarray experiments

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30 September 2017

Optimization of oligonucleotide-based DNA microarrays.

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30 September 2017

Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range

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30 September 2017

Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

1 reference

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30 September 2017

Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

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30 September 2017

Restricted chromosomal silencing in nucleolar dominance

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Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

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Translating the Histone Code

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30 September 2017

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

1 reference

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30 September 2017

Gene silencing as an adaptive defence against viruses

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30 September 2017

Computational analysis of microarray data

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30 September 2017

Protein-coding genes are epigenetically regulated in Arabidopsis polyploids

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30 September 2017

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

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30 September 2017

X-chromosome inactivation: counting, choice and initiation

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30 September 2017

Chromatin profiling using targeted DNA adenine methyltransferase

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30 September 2017

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

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Genomic imprinting and seed development: endosperm formation with and without sex.

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

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The epigenetics of nucleolar dominance

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30 September 2017

Noncoding RNA genes in dosage compensation and imprinting

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30 September 2017

Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

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30 September 2017

Genetic and epigenetic interactions in allopolyploid plants

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30 September 2017

Nucleolar dominance: uniparental gene silencing on a multi-megabase scale in genetic hybrids

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30 September 2017

A concise guide to cDNA microarray analysis

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30 September 2017

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

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30 September 2017

Genetic and epigenetic incompatibilities underlie hybrid dysgenesis in Peromyscus

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30 September 2017

Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana

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30 September 2017

Genome evolution in polyploids

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https://pubmed.ncbi.nlm.nih.gov/18079994

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Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array

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30 September 2017

Rapid structural and epigenetic changes in polyploid and aneuploid genomes

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30 September 2017

High density synthetic oligonucleotide arrays

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30 September 2017

Gene dosage and stochastic effects determine the severity and direction of uniparental ribosomal RNA gene silencing (nucleolar dominance) in Arabidopsis allopolyploids

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30 September 2017

Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

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30 September 2017

A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis

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30 September 2017

Epigenetic silencing of RNA polymerase I transcription: a role for DNA methylation and histone modification in nucleolar dominance

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30 September 2017

Paramutation and related allelic interactions

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30 September 2017

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Characterization of the yeast transcriptome

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30 September 2017

A change of ploidy can modify epigenetic silencing

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30 September 2017

Haplotypic divergence coupled with lack of diversity at the Arabidopsis thaliana alcohol dehydrogenase locus: roles for both balancing and directional selection?

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30 September 2017

The dynamic nature of polyploid genomes

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30 September 2017

Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution

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30 September 2017

Serial analysis of gene expression

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30 September 2017

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

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30 September 2017

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30 September 2017

Arabidopsis, a useful weed

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30 September 2017

More powerful procedures for multiple significance testing

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30 September 2017

Light-directed, spatially addressable parallel chemical synthesis

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30 September 2017

The (epi)genetic control of mammalian X-chromosome inactivation

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30 September 2017

Chromosomal imprinting in plants

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29 June 2018

Rapid Elimination of Low-Copy DNA Sequences in Polyploid Wheat: A Possible Mechanism for Differentiation of Homoeologous Chromosomes

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29 June 2018

Arabidopsis thaliana and Plant Molecular Genetics.

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22 September 2018

Transgene-induced RNA interference: a strategy for overcoming gene redundancy in polyploids to generate loss-of-function mutations

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22 September 2018

Formation of stable epialleles and their paramutation-like interaction in tetraploid Arabidopsis thaliana.

1 reference

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22 September 2018

Population genetic variation in genome-wide gene expression.

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22 September 2018

Evolution of gene expression in the Drosophila melanogaster subgroup.

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22 September 2018

A fortunate choice: the history of Arabidopsis as a model plant

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22 September 2018

Genetic variation in Arabidopsis suecica and its parental species A. arenosa and A. thaliana.

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22 September 2018

Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.

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22 September 2018

Remodeling of DNA methylation and phenotypic and transcriptional changes in synthetic Arabidopsis allotetraploids

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22 September 2018

RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila

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22 September 2018

The origins of genomic duplications in Arabidopsis.

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22 September 2018

Arabidopsis species hybrids in the study of species differences and evolution of amphiploidy in plants

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22 September 2018

Phenotypic instability and rapid gene silencing in newly formed arabidopsis allotetraploids.

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22 September 2018

Widespread aneuploidy revealed by DNA microarray expression profiling.

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22 September 2018

Molecular phylogenetic studies of Brassica, rorippa, arabidopsis and allied genera based on the internal transcribed spacer region of 18S-25S rDNA.

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22 September 2018

The sins of the fathers and mothers: genomic imprinting in mammalian development

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22 September 2018

Microarrays: biotechnology's discovery platform for functional genomics

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22 September 2018

Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

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12 December 2020

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Chromosomal rearrangement in autotetraploid plants of Arabidopsis thaliana

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

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Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences

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12 December 2020

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Nucleolar dominance and silencing of transcription

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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The basis of natural and artificial postzygotic hybridization barriers in Arabidopsis species

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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When the chips are down

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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Experimental design for gene expression microarrays

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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Sex-dependent gene expression and evolution of the Drosophila transcriptome

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ploidy regulation of gene expression

1 reference

https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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Analysis of a repetitive DNA family from Arabidopsis arenosa and relationships between Arabidopsis species

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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Collinearity between a 30-centimorgan segment of Arabidopsis thaliana chromosome 4 and duplicated regions within the Brassica napus genome

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https://pubmed.ncbi.nlm.nih.gov/18079994

12 December 2020

based on heuristic

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Identifiers

10.1111/J.1095-8312.2004.00351.X

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 August 2017

ResearchGate publication ID

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