Analysis of lysine recognition and specificity of the Bacillus subtilis L box riboswitch (Q36061912)

11 August 2017

Analysis of lysine recognition and specificity of the Bacillus subtilis L box riboswitch (English)

1 reference

11 August 2017

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Tina M Henkin

1 reference

11 August 2017

Sharnise N Wilson-Mitchell

series ordinal

1 reference

11 August 2017

Frank J Grundy

series ordinal

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11 August 2017

language of work or name

English

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publication date

13 March 2012

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11 August 2017

Nucleic Acids Research

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11 August 2017

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11 August 2017

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11 August 2017

5706-5717

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Creative Commons Attribution-NonCommercial 3.0 Unported

11 August 2017

start time

7 November 2016

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April 2022 Public Data File from Crossref

copyrighted

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cites work

Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation

1 reference

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Structural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine Riboswitch

2 October 2017

1 reference

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SAM Recognition and Conformational Switching Mechanism in the Bacillus subtilis yitJ S Box/SAM-I Riboswitch

2 October 2017

1 reference

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Structural and Biochemical Determinants of Ligand Binding by the c-di-GMP Riboswitch,

2 October 2017

1 reference

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Riboswitch RNAs: regulation of gene expression by direct monitoring of a physiological signal

2 October 2017

1 reference

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Amino acid recognition and gene regulation by riboswitches.

2 October 2017

1 reference

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Riboswitch RNAs: using RNA to sense cellular metabolism

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Structural insights into amino acid binding and gene control by a lysine riboswitch

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Crystal structure of the lysine riboswitch regulatory mRNA element

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Purine sensing by riboswitches

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Riboswitches: small-molecule recognition by gene regulatory RNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Control of alternative RNA splicing and gene expression by eukaryotic riboswitches

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

An intermolecular base triple as the basis of ligand specificity and affinity in the guanine- and adenine-sensing riboswitch RNAs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

A glycine-dependent riboswitch that uses cooperative binding to control gene expression

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Adenine riboswitches and gene activation by disruption of a transcription terminator

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

An mRNA structure in bacteria that controls gene expression by binding lysine

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

tRNA-mediated transcription antitermination in vitro: codon-anticodon pairing independent of the ribosome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Biosynthesis of diaminopimelate, the precursor of lysine and a component of peptidoglycan, is an essential function of Mycobacterium smegmatis.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Characterization of a Novel Riboswitch-Regulated Lysine Transporter inAggregatibacter actinomycetemcomitans

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Regulation of dipicolinic acid biosynthesis in sporulating Bacillus cereus. Characterization of enzymic changes and analysis of mutants

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Identification of aecA mutations in Bacillus subtilis as nucleotide substitutions in the untranslated leader region of the aspartokinase II operon

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

Antibacterial lysine analogs that target lysine riboswitches.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

A tertiary structural element in S box leader RNAs is required for S-adenosylmethionine-directed transcription termination

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

PhoP-P and RNA polymerase sigmaA holoenzyme are sufficient for transcription of Pho regulon promoters in Bacillus subtilis: PhoP-P activator sites within the coding region stimulate transcription in vitro

23 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3384330

The leader sequence of the Escherichia coli lysC gene is involved in the regulation of LysC synthesis

23 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22416067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural transitions induced by the interaction between tRNA(Gly) and the Bacillus subtilis glyQS T box leader RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22416067

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKS212

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

22416067

1 reference