Structural basis for retroviral integration into nucleosomes. (Q35933084)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26061770%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

title

Structural basis for retroviral integration into nucleosomes (English)

1 reference

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16 February 2020

1 reference

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16 February 2020

1 reference

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16 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26061770%20AND%20SRC:MED&resulttype=core&format=json

16 February 2020

Alan N Engelman

1 reference

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16 February 2020

Peter Cherepanov

1 reference

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16 February 2020

Erik Serrao

1 reference

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16 February 2020

Paul Lesbats

1 reference

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16 February 2020

Daniel P Maskell

1 reference

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16 February 2020

Rishi Matadeen

series ordinal

1 reference

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16 February 2020

Alessandro Costa

series ordinal

1 reference

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16 February 2020

language of work or name

English

0 references

publication date

10 June 2015

1 reference

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16 February 2020

1 reference

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16 February 2020

volume

523

1 reference

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16 February 2020

issue

7560

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16 February 2020

page(s)

366-369

1 reference

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Nucleosome adaptability conferred by sequence and structural variations in histone H2A-H2B dimers

16 February 2020

cites work

1 reference

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Host and viral determinants for MxB restriction of HIV-1 infection

2 October 2017

1 reference

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A genome-wide map of adeno-associated virus-mediated human gene targeting

2 October 2017

1 reference

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Serial number tagging reveals a prominent sequence preference of retrotransposon integration

2 October 2017

1 reference

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2 October 2017

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The Mu transpososome structure sheds light on DDE recombinase evolution

2 October 2017

1 reference

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Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence

2 October 2017

1 reference

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Assembly of prototype foamy virus strand transfer complexes on product DNA bypassing catalysis of integration

2 October 2017

1 reference

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RELION: implementation of a Bayesian approach to cryo-EM structure determination

2 October 2017

1 reference

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Solution conformations of prototype foamy virus integrase and its stable synaptic complex with U5 viral DNA.

2 October 2017

1 reference

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Differential pH-dependent cellular uptake pathways among foamy viruses elucidated using dual-colored fluorescent particles

2 October 2017

1 reference

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3′-Processing and strand transfer catalysed by retroviral integrasein crystallo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Novel functions of prototype foamy virus Gag glycine- arginine-rich boxes in reverse transcription and particle morphogenesis.

2 October 2017

1 reference

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The mechanism of retroviral integration from X-ray structures of its key intermediates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Molecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance.

2 October 2017

1 reference

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Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

2 October 2017

1 reference

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Retroviral intasome assembly and inhibition of DNA strand transfer

2 October 2017

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

2 October 2017

1 reference

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Functional and structural characterization of the integrase from the prototype foamy virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Subviral particle release determinants of prototype foamy virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

2 October 2017

1 reference

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HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications

2 October 2017

1 reference

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Bsoft: image processing and molecular modeling for electron microscopy

2 October 2017

1 reference

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SPARX, a new environment for Cryo-EM image processing

2 October 2017

1 reference

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EMAN2: an extensible image processing suite for electron microscopy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Asf1 mediates histone eviction and deposition during elongation by RNA polymerase II.

2 October 2017

1 reference

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Genome-wide mapping of foamy virus vector integrations into a human cell line

2 October 2017

1 reference

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Retroviral DNA integration: reaction pathway and critical intermediates

2 October 2017

1 reference

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Foamy virus vector integration sites in normal human cells

2 October 2017

1 reference

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UCSF Chimera--a visualization system for exploratory research and analysis

2 October 2017

1 reference

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WebLogo: A Sequence Logo Generator

2 October 2017

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Reconstitution of nucleosome core particles from recombinant histones and DNA.

2 October 2017

1 reference

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Accurate determination of local defocus and specimen tilt in electron microscopy

2 October 2017

1 reference

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HIV-1 integration in the human genome favors active genes and local hotspots

2 October 2017

1 reference

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

2 October 2017

1 reference

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BLAT—The BLAST-Like Alignment Tool

2 October 2017

1 reference

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Improved primate foamy virus vectors and packaging constructs

2 October 2017

1 reference

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Crystal structure of the nucleosome core particle at 2.8 Å resolution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

A new generation of the IMAGIC image processing system

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Human immunodeficiency virus integrase directs integration to sites of severe DNA distortion within the nucleosome core

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

DNA bending creates favored sites for retroviral integration: an explanation for preferred insertion sites in nucleosomes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Crystal structure of the catalytic domain of HIV-1 integrase: similarity to other polynucleotidyl transferases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Characterization of a newly derived human sarcoma cell line (HT-1080).

2 October 2017

1 reference

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Nucleosomes, DNA-binding proteins, and DNA sequence modulate retroviral integration target site selection

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Gammaretroviral integration into nucleosomal target DNA in vivo

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

Retroviral integration into minichromosomes in vitro

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4530500

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

27 July 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26061770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Isolation of histones and nucleosome cores from mammalian cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26061770

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE14495

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26061770%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

16 February 2020

0 references

1 reference

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16 February 2020

PubMed publication ID

26061770

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26061770%20AND%20SRC:MED&resulttype=core&format=json