Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis (Q35214937)

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scholarly article

Language	Label	Description	Also known as
English	Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis	scholarly article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis (English)

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

retrotransposon

0 references

Harmit Singh Malik

2

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

object named as

Sara L Sawyer

1

0 references

language of work or name

0 references

publication date

13 November 2006

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

103

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

47

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

17614-17619

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

Positive selection on the nonhomologous end-joining factor Cernunnos-XLF in the human lineage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

28 July 2018

Cernunnos interacts with the XRCC4 x DNA-ligase IV complex and is homologous to the yeast nonhomologous end-joining factor Nej1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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The DNA repair genes XPB and XPD defend cells from retroviral infection

1 reference

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Evidence for domesticated and wild populations of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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Happy together: the life and times of Ty retrotransposons and their hosts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

28 July 2018

Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

28 July 2018

Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae

1 reference

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Evolutionary expressed sequence tag analysis of Drosophila female reproductive tracts identifies genes subjected to positive selection

1 reference

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Host factors that affect Ty3 retrotransposition in Saccharomyces cerevisiae

1 reference

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Accuracy and power of statistical methods for detecting adaptive evolution in protein coding sequences and for identifying positively selected sites

1 reference

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Evidence that stable retroviral transduction and cell survival following DNA integration depend on components of the nonhomologous end joining repair pathway

1 reference

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Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G

1 reference

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Genomic DNA double-strand breaks are targets for hepadnaviral DNA integration

1 reference

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Population genetics of the wild yeast Saccharomyces paradoxus

1 reference

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Activation of a LTR-retrotransposon by telomere erosion

1 reference

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Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae.

1 reference

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Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

1 reference

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Sequencing and comparison of yeast species to identify genes and regulatory elements

1 reference

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Genomic evolution of the long terminal repeat retrotransposons in hemiascomycetous yeasts

1 reference

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Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance

1 reference

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Adaptive evolution of the tumour suppressor BRCA1 in humans and chimpanzees. Australian Breast Cancer Family Study

1 reference

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Rapid evolution of male reproductive genes in the descent of man.

1 reference

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28 July 2018

The Saccharomyces cerevisiae DNA recombination and repair functions of the RAD52 epistasis group inhibit Ty1 transposition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

28 July 2018

Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

28 July 2018

A role for DNA-PK in retroviral DNA integration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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PAML: a program package for phylogenetic analysis by maximum likelihood

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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Retrotransposon reverse-transcriptase-mediated repair of chromosomal breaks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

28 July 2018

Illegitimate replication of linear hepadnavirus DNA through nonhomologous recombination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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Preferential inclusion of extrachromosomal genetic elements in yeast meiotic spores

1 reference

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A test of neutral molecular evolution based on nucleotide data

1 reference

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Adaptive protein evolution at the Adh locus in Drosophila

1 reference

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Regulation of retrotransposition in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1693795

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Fitness effects of Ty transposition in Saccharomyces cerevisiae

1 reference

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GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

21 January 2018

Involvement of DNA end-binding protein Ku in Ty element retrotransposition

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

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Forward genetic analysis of visual behavior in zebrafish

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

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Conflict begets complexity: the evolution of centromeres

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

21 January 2018

Retroviruses and yeast retrotransposons use overlapping sets of host genes

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

21 January 2018

Role of the non-homologous DNA end joining pathway in the early steps of retroviral infection

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

21 January 2018

Capture of retrotransposon DNA at the sites of chromosomal double-strand breaks

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0605468103

21 January 2018

Ty RNA levels determine the spectrum of retrotransposition events that activate gene expression in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/17101967

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enhancement of Ty transposition at the ADH4 and ADH2 loci in meiotic yeast cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/17101967

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

K-Estimator: calculation of the number of nucleotide substitutions per site and the confidence intervals

1 reference

https://pubmed.ncbi.nlm.nih.gov/17101967

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variation in the pattern of synonymous and nonsynonymous difference between two fungal genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17101967

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.0605468103

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

2006PNAS..10317614S

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

7 August 2017

ResearchGate publication ID

0 references

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