Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer (Q35071642)

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Language	Label	Description	Also known as
English	Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer	scientific article

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

Sir2 represses endogenous polymerase II transcription units in the ribosomal DNA nontranscribed spacer (English)

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Europe PubMed Central

PubMed publication ID

6 August 2017

author name string

Chonghua Li

1

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Europe PubMed Central

PubMed publication ID

6 August 2017

John E Mueller

2

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Europe PubMed Central

PubMed publication ID

6 August 2017

Mary Bryk

3

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Europe PubMed Central

PubMed publication ID

6 August 2017

publication date

28 June 2006

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Europe PubMed Central

PubMed publication ID

6 August 2017

Molecular Biology of the Cell

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Europe PubMed Central

PubMed publication ID

6 August 2017

17

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Europe PubMed Central

PubMed publication ID

6 August 2017

9

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

3848-3859

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Europe PubMed Central

PubMed publication ID

6 August 2017

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1593162/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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1 reference

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Intergenic transcripts regulate the epigenetic state of rRNA genes

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Erasure of histone acetylation by Arabidopsis HDA6 mediates large-scale gene silencing in nucleolar dominance

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The requirements for COMPASS and Paf1 in transcriptional silencing and methylation of histone H3 in Saccharomyces cerevisiae

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Recombination Regulation by Transcription-Induced Cohesin Dissociation in rDNA Repeats

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Identifying gene-independent noncoding functional elements in the yeast ribosomal DNA by phylogenetic footprinting.

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Histone H2B ubiquitylation controls processive methylation but not monomethylation by Dot1 and Set1.

1 reference

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RNA meets chromatin

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Histone H4 lysine 91 acetylation a core domain modification associated with chromatin assembly

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Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing.

1 reference

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The Swi/Snf chromatin remodeling complex is required for ribosomal DNA and telomeric silencing in Saccharomyces cerevisiae

1 reference

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Redundant roles for histone H3 N-terminal lysine residues in subtelomeric gene repression in Saccharomyces cerevisiae

1 reference

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A nuclear FK506-binding protein is a histone chaperone regulating rDNA silencing

1 reference

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Epigenetic silencing of RNA polymerase I transcription

1 reference

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Association of the RENT complex with nontranscribed and coding regions of rDNA and a regional requirement for the replication fork block protein Fob1 in rDNA silencing

1 reference

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The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B.

1 reference

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The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae

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The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation

1 reference

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Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity

1 reference

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Lysine-79 of histone H3 is hypomethylated at silenced loci in yeast and mammalian cells: a potential mechanism for position-effect variegation

1 reference

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RNA polymerase I propagates unidirectional spreading of rDNA silent chromatin

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A novel mitochondrial protein, Tar1p, is encoded on the antisense strand of the nuclear 25S rDNA.

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Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus

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1 reference

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RPD3 is required for the inactivation of yeast ribosomal DNA genes in stationary phase

1 reference

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Gene silencing: trans-histone regulatory pathway in chromatin

1 reference

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Lysine methylation within the globular domain of histone H3 by Dot1 is important for telomeric silencing and Sir protein association

1 reference

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Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast

1 reference

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Methylation of histone H3 Lys 4 in coding regions of active genes

1 reference

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Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation

1 reference

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A trithorax-group complex purified from Saccharomyces cerevisiae is required for methylation of histone H3

1 reference

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Histone H3 lysine 4 methylation is mediated by Set1 and required for cell growth and rDNA silencing in Saccharomyces cerevisiae

1 reference

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Common themes in mechanisms of gene silencing

1 reference

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RNA polymerase III and RNA polymerase II promoter complexes are heterochromatin barriers in Saccharomyces cerevisiae

1 reference

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Histone acetylation and an epigenetic code

1 reference

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The Saccharomyces cerevisiae RDN1 locus is sequestered from interchromosomal meiotic ectopic recombination in a SIR2-dependent manner.

1 reference

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Sir2 links chromatin silencing, metabolism, and aging

1 reference

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The language of covalent histone modifications

1 reference

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8 July 2018

An enzymatic activity in the yeast Sir2 protein that is essential for gene silencing

1 reference

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8 July 2018

Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.

1 reference

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8 July 2018

Transcription factor UAF, expansion and contraction of ribosomal DNA (rDNA) repeats, and RNA polymerase switch in transcription of yeast rDNA

1 reference

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The economics of ribosome biosynthesis in yeast

1 reference

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Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity

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Exit from mitosis is triggered by Tem1-dependent release of the protein phosphatase Cdc14 from nucleolar RENT complex

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RNA polymerase switch in transcription of yeast rDNA: role of transcription factor UAF (upstream activation factor) in silencing rDNA transcription by RNA polymerase II.

1 reference

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The boundaries of the silenced HMR domain in Saccharomyces cerevisiae

1 reference

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A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors

1 reference

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SET1, a yeast member of the trithorax family, functions in transcriptional silencing and diverse cellular processes

1 reference

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Direct evidence for SIR2 modulation of chromatin structure in yeast rDNA

1 reference

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Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast

1 reference

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An unusual form of transcriptional silencing in yeast ribosomal DNA

1 reference

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SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast

1 reference

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8 July 2018

Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern

1 reference

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Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae

1 reference

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8 July 2018

Transcriptional silencing in yeast is associated with reduced nucleosome acetylation

1 reference

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Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast

1 reference

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1 reference

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1 reference

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Effects of alterations in the 3' flanking sequence on in vivo and in vitro expression of the yeast SUP4-o tRNATyr gene

1 reference

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Organization of replication of ribosomal DNA in Saccharomyces cerevisiae

1 reference

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A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.

1 reference

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1 reference

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1 reference

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Mechanism of transcriptional silencing in yeast

1 reference

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1 reference

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27 September 2018

SIR2 regulates recombination between different rDNA repeats, but not recombination within individual rRNA genes in yeast

1 reference

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1 reference

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A core nucleosome surface crucial for transcriptional silencing.

1 reference

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27 September 2018

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1 reference

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Acetylation of the yeast histone H4 N terminus regulates its binding to heterochromatin protein SIR3.

1 reference

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Net1 stimulates RNA polymerase I transcription and regulates nucleolar structure independently of controlling mitotic exit.

1 reference

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27 September 2018

Conserved Histone Variant H2A.Z Protects Euchromatin from the Ectopic Spread of Silent Heterochromatin

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA protein-interactions at the Saccharomyces cerevisiae 35 S rRNA promoter and in its surrounding region

1 reference

https://pubmed.ncbi.nlm.nih.gov/16807355

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Acetylation and accessibility of rDNA chromatin in Saccharomyces cerevisiae in (Delta)top1 and (Delta)sir2 mutants

1 reference

https://pubmed.ncbi.nlm.nih.gov/16807355

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence context effects on oligo(dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III

1 reference

https://pubmed.ncbi.nlm.nih.gov/16807355

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1091/MBC.E06-03-0205

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

6 August 2017

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