Insulator function and topological domain border strength scale with architectural protein occupancy (Q34485099)

2 August 2017

title

Insulator function and topological domain border strength scale with architectural protein occupancy (English)

1 reference

2 August 2017

Chin-Tong Ong

0 references

Zhaohui S Qin

0 references

Kevin Van Bortle

1 reference

2 August 2017

Michael H Nichols

1 reference

2 August 2017

Li Li

1 reference

2 August 2017

Naomi Takenaka

1 reference

2 August 2017

Victor G Corces

1 reference

2 August 2017

publication date

30 June 2014

1 reference

2 August 2017

1 reference

2 August 2017

1 reference

2 August 2017

1 reference

2 August 2017

page(s)

R82

1 reference

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

2 August 2017

cites work

1 reference

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Multiple structural maintenance of chromosome complexes at transcriptional regulatory elements.

6 July 2018

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Dynamic trans-acting factor colocalization in human cells

6 July 2018

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Organization of the mitotic chromosome

6 July 2018

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Cohesin-mediated interactions organize chromosomal domain architecture

6 July 2018

1 reference

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Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes

6 July 2018

1 reference

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Poly(ADP-ribosyl)ation regulates insulator function and intrachromosomal interactions in Drosophila

6 July 2018

1 reference

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Genomic and proteomic analyses of Prdm5 reveal interactions with insulator binding proteins in embryonic stem cells

6 July 2018

1 reference

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

6 July 2018

1 reference

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Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

The insulator protein Suppressor of Hairy-wing is an essential transcriptional repressor in the Drosophila ovary

6 July 2018

1 reference

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Ribosomal RNA gene transcription mediated by the master genome regulator protein CCCTC-binding factor (CTCF) is negatively regulated by the condensin complex

6 July 2018

1 reference

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Chromatin insulators: linking genome organization to cellular function

6 July 2018

1 reference

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

6 July 2018

1 reference

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Dynamic changes in the genomic localization of DNA replication-related element binding factor during the cell cycle

6 July 2018

1 reference

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Genome-wide control of RNA polymerase II activity by cohesin

6 July 2018

1 reference

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SCFSlimb ubiquitin ligase suppresses condensin II-mediated nuclear reorganization by degrading Cap-H2.

6 July 2018

1 reference

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Polycomb domain formation depends on short and long distance regulatory cues

6 July 2018

1 reference

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A subset of Drosophila Myc sites remain associated with mitotic chromosomes colocalized with insulator proteins

6 July 2018

1 reference

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Genome-wide quantitative enhancer activity maps identified by STARR-seq

6 July 2018

1 reference

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CDD: conserved domains and protein three-dimensional structure

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

The UCSC Genome Browser database: extensions and updates 2013.

6 July 2018

1 reference

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FlyBase: improvements to the bibliography

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Condensin II promotes the formation of chromosome territories by inducing axial compaction of polyploid interphase chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

The long-range interaction landscape of gene promoters

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

An integrated encyclopedia of DNA elements in the human genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Nuclear organization and genome function

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Nature and function of insulator protein binding sites in the Drosophila genome.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Inferring direct DNA binding from ChIP-seq

6 July 2018

1 reference

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Spatial partitioning of the regulatory landscape of the X-inactivation centre

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Topological domains in mammalian genomes identified by analysis of chromatin interactions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Enhancer decommissioning by LSD1 during embryonic stem cell differentiation

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Three-dimensional folding and functional organization principles of the Drosophila genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Human tRNA genes function as chromatin insulators

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Regulation of chromatin organization and inducible gene expression by a Drosophila insulator

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Genomic binding of Pol III transcription machinery and relationship with TFIIS transcription factor distribution in mouse embryonic stem cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

tRNA genes protect a reporter gene from epigenetic silencing in mouse cells

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

CTCF-mediated functional chromatin interactome in pluripotent cells

6 July 2018

1 reference

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Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

6 July 2018

1 reference

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Transcription by RNA polymerase III: more complex than we thought

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

MEME-ChIP: motif analysis of large DNA datasets

6 July 2018

1 reference

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A cis-regulatory map of the Drosophila genome.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Integrative genomics viewer

6 July 2018

1 reference

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Global genome organization mediated by RNA polymerase III-transcribed genes in fission yeast

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Aligning Short Sequencing Reads with Bowtie

6 July 2018

1 reference

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6 July 2018

1 reference

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Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

6 July 2018

1 reference

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6 July 2018

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6 July 2018

1 reference

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Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Centromeric localization of dispersed Pol III genes in fission yeast.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

CTCF: master weaver of the genome

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Three subclasses of a Drosophila insulator show distinct and cell type-specific genomic distributions

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Active promoters and insulators are marked by the centrosomal protein 190.

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

6 July 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Identification of cis-acting sites for condensin loading onto budding yeast chromosomes

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

CTCF physically links cohesin to chromatin

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Cohesin mediates transcriptional insulation by CCCTC-binding factor

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Coordinated control of dCTCF and gypsy chromatin insulators in Drosophila

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Identification, molecular cloning, and characterization of the sixth subunit of human transcription factor TFIIIC

6 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Exploring DNA structure with Cn3D.

6 July 2018

1 reference

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Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription

6 July 2018

1 reference

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Galaxy: a platform for interactive large-scale genome analysis

6 July 2018

1 reference

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The ENCODE (ENCyclopedia Of DNA Elements) Project

6 July 2018

1 reference

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6 July 2018

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6 July 2018

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Interactions between the Su(Hw) and Mod(mdg4) proteins required for gypsy insulator function

6 July 2018

1 reference

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6 July 2018

1 reference

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The boundaries of the silenced HMR domain in Saccharomyces cerevisiae

6 July 2018

1 reference

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Cn3D: a new generation of three-dimensional molecular structure viewer

6 July 2018

1 reference

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Chromatid segregation at anaphase requires the barren product, a novel chromosome-associated protein that interacts with Topoisomerase II.

6 July 2018

1 reference

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Successive gain of insulator proteins in arthropod evolution

6 July 2018

1 reference

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Biological techniques: Chromosomes captured one by one.

27 October 2018

1 reference

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The Chriz–Z4 complex recruits JIL-1 to polytene chromosomes,a requirement for interband-specific phosphorylation of H3S10

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

The centrosomal protein CP190 is a component of the gypsy chromatin insulator

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4226948

Mapping of INS promoter interactions reveals its role in long-range regulation of SYT8 transcription

27 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24981874

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2014-15-5-R82

1 reference

Dimensions Publication ID

2 August 2017

0 references

1 reference

2 August 2017

1 reference