Solvent effects on the energy landscapes and folding kinetics of polyalanine (Q34445434)

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scholarly article

Language	Label	Description	Also known as
English	Solvent effects on the energy landscapes and folding kinetics of polyalanine	scholarly article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Solvent effects on the energy landscapes and folding kinetics of polyalanine (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

energy landscape

1 reference

based on heuristic

inferred from title

author name string

Y Levy

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

J Jortner

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

O M Becker

3

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

language of work or name

0 references

publication date

20 February 2001

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

number of pages

6

1 reference

based on heuristic

inferred from page(s)

Proceedings of the National Academy of Sciences of the United States of America

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

98

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

5

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

2188-2193

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Physical reasons for the unusual alpha-helix stabilization afforded by charged or neutral polar residues in alanine-rich peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Effective energy function for proteins in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Obligatory steps in protein folding and the conformational diversity of the transition state

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

"New View" of Protein Folding Reconciled with the Old Through Multiple Unfolding Simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Polyalanine-based peptides as models for self-associated beta-pleated-sheet complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Helix propagation and N-cap propensities of the amino acids measured in alanine-based peptides in 40 volume percent trifluoroethanol

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Helix folding simulations with various initial conformations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Helix propensities of the amino acids measured in alanine-based peptides without helix-stabilizing side-chain interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Free energy determinants of secondary structure formation: I. alpha-Helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Conformational studies of poly-L-alanine in water.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Unusually stable helix formation in short alanine-based peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Unfolding of an ?-helix in water

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

A molecular dynamics simulation of polyalanine: an analysis of equilibrium motions and helix-coil transitions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Molecular dynamics simulations of helix denaturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Empirical Predictions of Protein Conformation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

6 July 2018

Role of water on unfolding kinetics of helical peptides studied by molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

A thermodynamic scale for the helix-forming tendencies of the commonly occurring amino acids

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Kinetic steps for alpha-helix formation

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Protein Folding: A Perspective from Theory and Experiment.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Structural relaxation in atomic clusters: master equation dynamics.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Comparison of simple potential functions for simulating liquid water

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Protein folding funnels: the nature of the transition state ensemble

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.041611998

21 January 2018

Direct computation of long time processes in peptides and proteins: reaction path study of the coil-to-helix transition in polyalanine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=30113

27 October 2018

Molecular dynamics simulation of the stability of a 22-residue alpha-helix in water and 30% trifluoroethanol

1 reference

https://pubmed.ncbi.nlm.nih.gov/11226214

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.041611998

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

2001PNAS...98.2188L

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

0 references

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