Charting histone modifications and the functional organization of mammalian genomes (Q29620707)

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scientific article (publication date: 2011)

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English	Charting histone modifications and the functional organization of mammalian genomes	scientific article (publication date: 2011)

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Europe PubMed Central

Charting histone modifications and the functional organization of mammalian genomes (English)

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21116306

30 April 2017

author name string

Zhou VW

1

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21116306

30 April 2017

Goren A

2

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21116306

30 April 2017

Bernstein BE

3

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30 April 2017

language of work or name

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30 April 2017

publication date

January 2011

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30 April 2017

Nature Reviews Genetics

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12

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1

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30 April 2017

Controlling the double helix

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genome-wide approaches to studying chromatin modifications

1 reference

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31 March 2020

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

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31 March 2020

Chromatin structure and the inheritance of epigenetic information

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

The mammalian epigenome

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31 March 2020

Mechanisms of polycomb gene silencing: knowns and unknowns

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31 March 2020

The role of chromatin during transcription

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31 March 2020

Environmental epigenomics and disease susceptibility

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31 March 2020

High-resolution mapping and characterization of open chromatin across the genome

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31 March 2020

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

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31 March 2020

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

1 reference

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31 March 2020

Mapping accessible chromatin regions using Sono-Seq

1 reference

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31 March 2020

Genome-scale DNA methylation maps of pluripotent and differentiated cells

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31 March 2020

Human DNA methylomes at base resolution show widespread epigenomic differences

1 reference

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31 March 2020

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

1 reference

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31 March 2020

Dynamic regulation of nucleosome positioning in the human genome

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31 March 2020

The DNA-encoded nucleosome organization of a eukaryotic genome

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31 March 2020

Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones

1 reference

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31 March 2020

Next-generation genomics: an integrative approach

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31 March 2020

ChIP-seq: advantages and challenges of a maturing technology

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

High-resolution profiling of histone methylations in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Combinatorial patterns of histone acetylations and methylations in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Discovery and annotation of functional chromatin signatures in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Discovery and characterization of chromatin states for systematic annotation of the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genomic characterization reveals a simple histone H4 acetylation code.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Yeast histone H4 N-terminal sequence is required for promoter activation in vivo

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Developmental programming of CpG island methylation profiles in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genomic maps and comparative analysis of histone modifications in human and mouse

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A high-resolution map of active promoters in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Distinct factors control histone variant H3.3 localization at specific genomic regions

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Histone H2A.Z and DNA methylation are mutually antagonistic chromatin marks

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Molecular implementation and physiological roles for histone H3 lysine 4 (H3K4) methylation

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

CpG-binding protein (CXXC finger protein 1) is a component of the mammalian Set1 histone H3-Lys4 methyltransferase complex, the analogue of the yeast Set1/COMPASS complex

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

CpG islands recruit a histone H3 lysine 36 demethylase

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A unifying model for the selective regulation of inducible transcription by CpG islands and nucleosome remodeling

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Control of inducible gene expression by signal-dependent transcriptional elongation

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

c-Myc regulates transcriptional pause release

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Differential H3K4 methylation identifies developmentally poised hematopoietic genes

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Control of developmental regulators by Polycomb in human embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Polycomb complexes repress developmental regulators in murine embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Chromatin signatures of pluripotent cell lines

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A bivalent chromatin structure marks key developmental genes in embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genome-wide chromatin maps derived from limited numbers of hematopoietic progenitors

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Divergent transcription from active promoters

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

AEBP2 as a potential targeting protein for Polycomb Repression Complex PRC2.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Jarid2 and PRC2, partners in regulating gene expression

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

JARID2 regulates binding of the Polycomb repressive complex 2 to target genes in ES cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Jarid2/Jumonji coordinates control of PRC2 enzymatic activity and target gene occupancy in pluripotent cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

JUMONJI, a critical factor for cardiac development, functions as a transcriptional repressor

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Long noncoding RNA as modular scaffold of histone modification complexes

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Role of the polycomb protein EED in the propagation of repressive histone marks

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A model for transmission of the H3K27me3 epigenetic mark

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A vertebrate Polycomb response element governs segmentation of the posterior hindbrain

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A region of the human HOXD cluster that confers polycomb-group responsiveness

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

The epigenomics of cancer

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Comprehensive methylome map of lineage commitment from haematopoietic progenitors

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Dissecting direct reprogramming through integrative genomic analysis

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Expansion of the eukaryotic proteome by alternative splicing

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Chromatin organization marks exon-intron structure

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Differential chromatin marking of introns and expressed exons by H3K36me3.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Nucleosomes are well positioned in exons and carry characteristic histone modifications

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Nucleosome positioning as a determinant of exon recognition

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

When chromatin meets splicing

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Regulation of alternative splicing by histone modifications

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Genomic views of distant-acting enhancers

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

ChIP-seq accurately predicts tissue-specific activity of enhancers

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Histone modifications at human enhancers reflect global cell-type-specific gene expression

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Widespread transcription at neuronal activity-regulated enhancers

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A large fraction of extragenic RNA pol II transcription sites overlap enhancers

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

CTCF: master weaver of the genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Cohesin mediates transcriptional insulation by CCCTC-binding factor

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Recruitment to the nuclear periphery can alter expression of genes in human cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Transcriptional repression mediated by repositioning of genes to the nuclear lamina

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Gene regulation through nuclear organization.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Replicating by the clock

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Establishment of transcriptional competence in early and late S phase

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Pan-S replication patterns and chromosomal domains defined by genome-tiling arrays of ENCODE genomic areas

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Histone acetylation regulates the time of replication origin firing

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

DNA replication timing of the human beta-globin domain is controlled by histone modification at the origin

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Preferential associations between co-regulated genes reveal a transcriptional interactome in erythroid cells

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Initial genomics of the human nucleolus

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA.

1 reference

https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

The NIH Roadmap Epigenomics Mapping Consortium

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

Tackling the epigenome: challenges and opportunities for collaboration

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https://api.crossref.org/works/10.1038%2FNRG2905

31 March 2020

A chromatin landmark and transcription initiation at most promoters in human cells

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https://pubmed.ncbi.nlm.nih.gov/21116306

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/21116306

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An oestrogen-receptor-α-bound human chromatin interactome

1 reference

https://pubmed.ncbi.nlm.nih.gov/21116306

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/21116306

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

GC-rich sequence elements recruit PRC2 in mammalian ES cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/21116306

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1038/NRG2905

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21116306

30 April 2017

Consolidated OpenCitations Corpus – April 2017

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Consolidated OpenCitations Corpus – April 2017

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2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21116306

30 April 2017

Consolidated OpenCitations Corpus – April 2017

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