Structure and RNA-binding properties of the Not1-Not2-Not5 module of the yeast Ccr4-Not complex (Q27687142): Difference between revisions

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scientific article

Language	Label	Description	Also known as
English	Structure and RNA-binding properties of the Not1-Not2-Not5 module of the yeast Ccr4-Not complex	scientific article

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scholarly article

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Structure and RNA-binding properties of the Not1-Not2-Not5 module of the yeast Ccr4-Not complex (English)

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CCR4-NOT core DEDD family RNase subunit POP2 YNR052C

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GOA release 2020-03-11

CCR4-NOT core subunit NOT3 YIL038C

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GOA release 2020-03-11

CCR4-NOT core subunit NOT5 YPR072W

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GOA release 2020-03-11

CCR4-NOT core subunit CDC36 YDL165W

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GOA release 2020-03-11

5

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7

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Bertrand Séraphin

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object named as

Varun Bhaskar

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author name string

Vladimir Roudko

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Jérôme Basquin

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Kundan Sharma

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publication date

November 2013

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Nature Structural & Molecular Biology

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20

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11

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1281-8

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https://scigraph.springernature.com/pub.10.1038/nsmb.2686

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The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

The yeast POP2 gene encodes a nuclease involved in mRNA deadenylation

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

GW182 proteins directly recruit cytoplasmic deadenylase complexes to miRNA targets

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

miRNA repression involves GW182-mediated recruitment of CCR4-NOT through conserved W-containing motifs

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

miRNA-mediated deadenylation is orchestrated by GW182 through two conserved motifs that interact with CCR4-NOT

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

PUF proteins bind Pop2p to regulate messenger RNAs

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

NANOS2 interacts with the CCR4-NOT deadenylation complex and leads to suppression of specific RNAs

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Ccr4-Not complex: the control freak of eukaryotic cells

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https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Human Ccr4-Not complexes contain variable deadenylase subunits

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

NOT10 and C2orf29/NOT11 form a conserved module of the CCR4-NOT complex that docks onto the NOT1 N-terminal domain

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

C2ORF29/CNOT11 and CNOT10 form a new module of the CCR4-NOT complex

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Architecture of the nuclease module of the yeast Ccr4-not complex: the Not1-Caf1-Ccr4 interaction

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Obesity resistance and increased hepatic expression of catabolism-related mRNAs in Cnot3+/- mice

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

CNOT2 depletion disrupts and inhibits the CCR4-NOT deadenylase complex and induces apoptotic cell death

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Repression of promoter activity by CNOT2, a subunit of the transcription regulatory Ccr4-not complex

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

The yeast EDC1 mRNA undergoes deadenylation-independent decapping stimulated by Not2p, Not4p, and Not5p

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

A conserved HEAT domain within eIF4G directs assembly of the translation initiation machinery

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Dali server: conservation mapping in 3D

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Crystal structures of two Sm protein complexes and their implications for the assembly of the spliceosomal snRNPs

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

RNA binding in an Sm core domain: X-ray structure and functional analysis of an archaeal Sm protein complex

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

LSm proteins form heptameric rings that bind to RNA via repeating motifs

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Structure of the spliceosomal U4 snRNP core domain and its implication for snRNP biogenesis

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

An in vivo map of the yeast protein interactome

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes.

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Integration, scaling, space-group assignment and post-refinement

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

The Buccaneer software for automated model building. 1. Tracing protein chains

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Features and development of Coot

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Clustal W and Clustal X version 2.0

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

OpenMS - an open-source software framework for mass spectrometry

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Open mass spectrometry search algorithm

1 reference

https://api.crossref.org/works/10.1038/NSMB.2686

21 April 2017

Comparison of ARM and HEAT protein repeats

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 April 2017

ALINE: a WYSIWYG protein-sequence alignment editor for publication-quality alignments

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 April 2017

RNA decay machines: deadenylation by the Ccr4-not and Pan2-Pan3 complexes.

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

The Ccr4--not complex

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Subunits of the Drosophila CCR4-NOT complex and their roles in mRNA deadenylation.

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5.

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

CCR4 is a glucose-regulated transcription factor whose leucine-rich repeat binds several proteins important for placing CCR4 in its proper promoter context

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

The Not3/5 subunit of the Ccr4-Not complex: a central regulator of gene expression that integrates signals between the cytoplasm and the nucleus in eukaryotic cells

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function.

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

The Ccr4-not complex and yTAF1 (yTaf(II)130p/yTaf(II)145p) show physical and functional interactions

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Specific roles for the Ccr4-Not complex subunits in expression of the genome

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Identification of a ubiquitin-protein ligase subunit within the CCR4-NOT transcription repressor complex

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Bicaudal-C recruits CCR4-NOT deadenylase to target mRNAs and regulates oogenesis, cytoskeletal organization, and its own expression.

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Interaction between NANOS2 and the CCR4-NOT deadenylation complex is essential for male germ cell development in mouse

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

STRAP: editor for STRuctural Alignments of Proteins

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

ProteoWizard: open source software for rapid proteomics tools development

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

OpenMS and TOPP: Open Source Software for LC-MS Data Analysis

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

Investigation of protein–RNA interactions by mass spectrometry—Techniques and applications

1 reference

https://api.crossref.org/works/10.1038%2FNSMB.2686

21 January 2018

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