Expansion of the BioCyc collection of pathway/genome databases to 160 genomes (Q24535096)

From Wikidata

Jump to navigation Jump to search

The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.

scientific article

Language	Label	Description	Also known as
English	Expansion of the BioCyc collection of pathway/genome databases to 160 genomes	scientific article

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

0 references

1

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Núria López-Bigas

10

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

object named as

Sophia Tsoka

7

0 references

Caroline Moore-Kochlacs

3

object named as

Caroline Moore-Kochlacs

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Christos Ouzounis

object named as

Christos A Ouzounis

2

0 references

9

object named as

Victor Kunin

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

4

object named as

Leon Goldovsky

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Nikos Darzentas

8

object named as

Nikos Darzentas

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

author name string

Pallavi Kaipa

5

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Dag Ahrén

6

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

language of work or name

0 references

publication date

24 October 2005

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

33

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

19

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

6083-6089

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

describes a project that uses

1 reference

Europe PubMed Central

26 June 2022

https://europepmc.org/article/PMC/PMC1266070

based on heuristic

inferred from PubMed Central ID database lookup

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

Computational prediction of human metabolic pathways from the complete human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

The Mouse Genome Database (MGD): from genes to mice--a community resource for mouse biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

FlyBase: genes and gene models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

EcoCyc: a comprehensive database resource for Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

The Universal Protein Resource (UniProt)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

The past, present and future of genome-wide re-annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

The complete genome sequence of Francisella tularensis, the causative agent of tularemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

The KEGG resource for deciphering the genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

Querying and computing with BioCyc databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

The Pathway Tools software

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

24 March 2017

Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

7 April 2017

MagicMatch--cross-referencing sequence identifiers across databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

An evidence ontology for use in pathway/genome databases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

Metabolic database systems for the analysis of genome-wide function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

MetaCyc: a multiorganism database of metabolic pathways and enzymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

The phylogenetic extent of metabolic enzymes and pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

Pathway databases: a case study in computational symbolic theories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

Functional versatility and molecular diversity of the metabolic map of Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

An ontology for biological function based on molecular interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

Global properties of the metabolic map of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

27 September 2017

Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

29 November 2018

PseudoCyc, a pathway-genome database for Pseudomonas aeruginosa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

29 November 2018

Evaluation of computational metabolic-pathway predictions for Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

29 November 2018

The Comprehensive Microbial Resource.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

29 November 2018

Prediction of enzyme classification from protein sequence without the use of sequence similarity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1266070

29 November 2018

HinCyc: a knowledge base of the complete genome and metabolic pathways of H. influenzae

1 reference

https://pubmed.ncbi.nlm.nih.gov/16246909

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Robustness of metabolic map reconstruction

1 reference

https://pubmed.ncbi.nlm.nih.gov/16246909

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products

1 reference

https://pubmed.ncbi.nlm.nih.gov/16246909

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrated pathway–genome databases and their role in drug discovery

1 reference

https://pubmed.ncbi.nlm.nih.gov/16246909

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolic databases

1 reference

https://pubmed.ncbi.nlm.nih.gov/16246909

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKI892

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

release_ttfs5gffgvgebfj5fvozjybg2m

0 references

OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24535096&oldid=1785107759"