Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks (Q21284254): Difference between revisions

From Wikidata

Jump to navigation Jump to search

Browse history interactively

← Older edit

Revision as of 08:11, 13 February 2021 (restore) Sic19 (talk | contribs) Property creators 12,073,380 edits ‎Updated Item: added P8978 DBLP Publication ID ← Older edit		Latest revision as of 22:57, 11 June 2024 undo Twofivesixbot (talk | contribs) Bots 17,671,757 edits ‎Updated Item: rm P2888 pointing to scigraph.springernature.com; site discontinued and merely duplicating DOI
(22 intermediate revisions by 8 users not shown)
description / pt-br		description / pt-br
	artigo científico		artigo científico (publicado na 2006)
description / bn		description / bn
			২০০৬-এ প্রকাশিত বৈজ্ঞানিক নিবন্ধ
description / af		description / af
			wetenskaplike artikel
description / fa		description / fa
			مقالهٔ علمی
description / ur		description / ur
			سائنسی مضمون
		Property / author name string: David J Reiss / qualifier
			author given names: David J
		Property / author name string: David J Reiss / qualifier
			author last names: Reiss
		Property / author name string: David J Reiss / reference
			stated in: Dimensions Dimensions Publication ID: 1052065031 retrieved: 18 August 2022 Timestamp +2022-08-18T00:00:00Z Timezone +00:00 Calendar Gregorian Precision 1 day Before 0 After 0
Property / author name string
	Nitin S Baliga
Property / author name string: Nitin S Baliga / rank
	Normal rank
Property / author name string: Nitin S Baliga / qualifier
	series ordinal: 2
		Property / author: Richard Bonneau / qualifier
			object named as: Richard Bonneau
		Property / author: Richard Bonneau / qualifier
			author given names: Richard
		Property / author: Richard Bonneau / qualifier
			author last names: Bonneau
		Property / author: Richard Bonneau / reference
			stated in: Dimensions Dimensions Publication ID: 1052065031 retrieved: 18 August 2022 Timestamp +2022-08-18T00:00:00Z Timezone +00:00 Calendar Gregorian Precision 1 day Before 0 After 0
Property / exact match
	https://scigraph.springernature.com/pub.10.1186/1471-2105-7-280
Property / exact match: https://scigraph.springernature.com/pub.10.1186/1471-2105-7-280 / rank
	Normal rank
		Property / author
			Nitin S Baliga
		Property / author: Nitin S Baliga / rank
			Normal rank
		Property / author: Nitin S Baliga / qualifier
			series ordinal: 2
		Property / author: Nitin S Baliga / qualifier
			author given names: Nitin S
		Property / author: Nitin S Baliga / qualifier
			author last names: Baliga
		Property / author: Nitin S Baliga / qualifier
			object named as: Nitin S Baliga
		Property / author: Nitin S Baliga / reference
			stated in: Dimensions Dimensions Publication ID: 1052065031 retrieved: 18 August 2022 Timestamp +2022-08-18T00:00:00Z Timezone +00:00 Calendar Gregorian Precision 1 day Before 0 After 0
		Property / cites work
			Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity
		Property / cites work: Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity / rank
			Normal rank
		Property / cites work: Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity / reference
			stated in: PubMed reference URL: https://pubmed.ncbi.nlm.nih.gov/16749936 retrieved: 12 December 2020 Timestamp +2020-12-12T00:00:00Z Timezone +00:00 Calendar Gregorian Precision 1 day Before 0 After 0 based on heuristic: inferred from PubMed ID database lookup
		Property / main subject
			data set
		Property / main subject: data set / rank
			Normal rank
		Property / main subject: data set / reference
			based on heuristic: inferred from title
		Property / main subject
			Biclustering
		Property / main subject: Biclustering / rank
			Normal rank
		Property / main subject: Biclustering / reference
			based on heuristic: inferred from title
		Property / describes a project that uses
			Cytoscape
		Property / describes a project that uses: Cytoscape / rank
			Normal rank
		Property / describes a project that uses: Cytoscape / qualifier
			object named as: Cytoscape
		Property / describes a project that uses: Cytoscape / reference
			stated in: CZ Software Mentions: A large dataset of software mentions in the biomedical literature

---

Latest revision as of 22:57, 11 June 2024

scientific article

Language	Label	Description	Also known as
English	Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks	scientific article

Statements

instance of

scholarly article

0 references

title

Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks (English)

0 references

main subject

data set

1 reference

based on heuristic

inferred from title

Biclustering

1 reference

based on heuristic

inferred from title

author

Richard Bonneau

series ordinal

3

object named as

Richard Bonneau

author given names

Richard

author last names

Bonneau

1 reference

stated in

Dimensions

Dimensions Publication ID

1052065031

retrieved

18 August 2022

Nitin S Baliga

series ordinal

2

author given names

Nitin S

author last names

Baliga

object named as

Nitin S Baliga

1 reference

stated in

Dimensions

Dimensions Publication ID

1052065031

retrieved

18 August 2022

author name string

David J Reiss

series ordinal

1

author given names

David J

author last names

Reiss

1 reference

stated in

Dimensions

Dimensions Publication ID

1052065031

retrieved

18 August 2022

language of work or name

English

0 references

publication date

2006

0 references

published in

BMC Bioinformatics

0 references

volume

7

0 references

issue

1

0 references

page(s)

280

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

1 reference

stated in

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

OpWise: operons aid the identification of differentially expressed genes in bacterial microarray experiments

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

EXPANDER--an integrative program suite for microarray data analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Prolinks: a database of protein functional linkages derived from coevolution

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

The COG database: an updated version includes eukaryotes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Spectral biclustering of microarray data: coclustering genes and conditions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

KEGG: kyoto encyclopedia of genes and genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

The use of gene clusters to infer functional coupling

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Sequence logos: a new way to display consensus sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Optimization by Simulated Annealing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Basic local alignment search tool

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

The Gene Ontology (GO) database and informatics resource

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Genomic expression programs in the response of yeast cells to environmental changes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Emergence of Scaling in Random Networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Transcriptional regulatory code of a eukaryotic genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Assessing computational tools for the discovery of transcription factor binding sites

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

The Database of Interacting Proteins: 2004 update

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Identifying regulatory networks by combinatorial analysis of promoter elements

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

The protein-protein interaction map of Helicobacter pylori

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

Biclustering of expression data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

19 March 2017

TRANSFAC: transcriptional regulation, from patterns to profiles

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

Detecting protein function and protein-protein interactions from genome sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

''R"--project for statistical computing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

A gene-coexpression network for global discovery of conserved genetic modules

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

BIND: the Biomolecular Interaction Network Database

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

Discovering regulatory and signalling circuits in molecular interaction networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

Protein interaction maps for complete genomes based on gene fusion events

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

7 April 2017

Biclustering algorithms for biological data analysis: a survey

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Application of simulated annealing to the biclustering of gene expression data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Integrative analysis of genome-wide experiments in the context of a large high-throughput data compendium

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

The Gaggle: an open-source software system for integrating bioinformatics software and data sources

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

BicAT: a biclustering analysis toolbox

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

A systematic comparison and evaluation of biclustering methods for gene expression data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Conservation and evolvability in regulatory networks: the evolution of ribosomal regulation in yeast

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Discovering transcriptional modules from motif, chip-chip and microarray data.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Nod1 responds to peptidoglycan delivered by the Helicobacter pylori cag pathogenicity island

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Genomic analysis of stationary-phase and exit in Saccharomyces cerevisiae: gene expression and identification of novel essential genes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

A graph-theoretic approach to testing associations between disparate sources of functional genomics data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Genome-wide analysis of transcriptional hierarchy and feedback regulation in the flagellar system of Helicobacter pylori

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Reconstruction of microbial transcriptional regulatory networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Modification of Helicobacter pylori outer membrane protein expression during experimental infection of rhesus macaques

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Characterizing gene sets with FuncAssociate

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Combining phylogenetic data with co-regulated genes to identify regulatory motifs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Biclustering microarray data by Gibbs sampling

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Discovering local structure in gene expression data: the order-preserving submatrix problem

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Promoter analysis of Helicobacter pylori genes with enhanced expression at low pH.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Iterative signature algorithm for the analysis of large-scale gene expression data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Assessing experimentally derived interactions in a small world

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

How well do we understand the clusters found in microarray data?

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Extracting conserved gene expression motifs from gene expression data.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Coordinate regulation of energy transduction modules in Halobacterium sp. analyzed by a global systems approach

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Discovering statistically significant biclusters in gene expression data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Regulation of flagellar assembly

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Modeling and simulation of genetic regulatory systems: a literature review

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Predictome: a database of putative functional links between proteins

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Ordering genes in a flagella pathway by analysis of expression kinetics from living bacteria

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Genomic and genetic dissection of an archaeal regulon

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar typhimurium and Escherichia coli

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Genetic network inference: from co-expression clustering to reverse engineering

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Protein function in the post-genomic era.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

SirR, a novel iron-dependent repressor in Staphylococcus epidermidis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

12 September 2017

Comprehensive quantitative analyses of the effects of promoter sequence elements on mRNA transcription

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

27 September 2017

Regulatory sequence analysis tools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

27 September 2017

Gibbs Recursive Sampler: finding transcription factor binding sites

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

27 September 2017

Colonization of gnotobiotic piglets by Helicobacter pylori deficient in two flagellin genes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

27 September 2017

A systems view of haloarchaeal strategies to withstand stress from transition metals

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

30 May 2018

Meta-MEME: motif-based hidden Markov models of protein families

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

30 May 2018

Filling gaps in a metabolic network using expression information

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

29 November 2018

Computational discovery of gene modules and regulatory networks

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

29 November 2018

Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

29 November 2018

A solution to the problem of separation in logistic regression.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

29 November 2018

A powerful non-homology method for the prediction of operons in prokaryotes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

29 November 2018

Inferring regulatory elements from a whole genome. An analysis of Helicobacter pylori sigma(80) family of promoter signals.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1502140

retrieved

29 November 2018

Saturation mutagenesis of the haloarchaeal bop gene promoter: identification of DNA supercoiling sensitivity sites and absence of TFB recognition element and UAS enhancer activity

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16749936

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2105-7-280

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1468299

DBLP publication ID

journals/bmcbi/ReissBB06

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

Dimensions Publication ID

1052065031

0 references

OpenCitations bibliographic resource ID

1468299

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1468299

PMC publication ID

1502140

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1468299

PubMed publication ID

16749936

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1468299

ResearchGate publication ID

7032889

0 references

 

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q21284254&oldid=2176754966"