Scalable rule-based modelling of allosteric proteins and biochemical networks (Q21145330)

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Language	Label	Description	Also known as
English	Scalable rule-based modelling of allosteric proteins and biochemical networks	scientific article

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Scalable rule-based modelling of allosteric proteins and biochemical networks (English)

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Peter S Swain

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author name string

Julien F Ollivier

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Vahid Shahrezaei

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2010

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PLOS Computational Biology

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6

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11

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e1000975

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A domain-oriented approach to the reduction of combinatorial complexity in signal transduction networks

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G protein-coupled receptors form stable complexes with inwardly rectifying potassium channels and adenylyl cyclase

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ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL

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19 March 2017

Protein modules and signalling networks

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Assembly of Cell Regulatory Systems Through Protein Interaction Domains

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

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SH2 domains, interaction modules and cellular wiring

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Complex topology rather than complex membership is a determinant of protein dosage sensitivity

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From molecular to modular cell biology

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Network motifs: theory and experimental approaches

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Seven-transmembrane receptors

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Comparison of Experimental Binding Data and Theoretical Models in Proteins Containing Subunits*

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Sending signals dynamically

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12 September 2017

Internal coarse-graining of molecular systems

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12 September 2017

Simulation of large-scale rule-based models

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Kinetic Monte Carlo method for rule-based modeling of biochemical networks.

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Physiological relevance of GPCR oligomerization and its impact on drug discovery

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An allosteric model of calmodulin explains differential activation of PP2B and CaMKII

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Colored extrinsic fluctuations and stochastic gene expression

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Facile: a command-line network compiler for systems biology

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Thermodynamically feasible kinetic models of reaction networks

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The 7 TM G-protein-coupled receptor target family

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12 September 2017

Rules for modeling signal-transduction systems

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12 September 2017

Stochastic dynamics of macromolecular-assembly networks.

1 reference

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12 September 2017

On imposing detailed balance in complex reaction mechanisms.

1 reference

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1 reference

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Principles: a model for the allosteric interactions between ligand binding sites within a dimeric GPCR.

1 reference

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Automatic generation of cellular reaction networks with Moleculizer 1.0.

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12 September 2017

Oligomerization of G protein-coupled receptors: past, present, and future

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BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains

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G protein-coupled receptor dimerization: function and ligand pharmacology

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How to impose microscopic reversibility in complex reaction mechanisms

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Principles: receptor theory in pharmacology

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The complexity of complexes in signal transduction.

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G-protein-coupled receptor oligomerization and its potential for drug discovery

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G protein-coupled receptor allosterism and complexing

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Protein molecules as computational elements in living cells

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10.1371/JOURNAL.PCBI.1000975

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