Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola) (Q101217312)

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6 November 2020

title

Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola) (English)

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6 November 2020

main subject

Meloidogyne graminicola

object named as

Meloidogyne graminicola

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6 November 2020

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6 November 2020

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6 November 2020

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6 November 2020

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6 November 2020

Georgios D Koutsovoulos

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6 November 2020

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6 November 2020

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6 November 2020

Laetitia Perfus-Barbeoch

object named as

Laetitia Perfus-Barbeoch

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6 November 2020

Céline Lopez-Roques

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6 November 2020

Olivier Bouchez

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6 November 2020

Margot Zahm

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6 November 2020

publication date

13 September 2020

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6 November 2020

number of pages

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inferred from page(s)

published in

Ecology and Evolution

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6 November 2020

volume

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issue

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6 November 2020

page(s)

11006-11021

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Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita

6 November 2020

cites work

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Splicing in Caenorhabditis elegans does not require an AG at the 3' splice acceptor site

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Heterodera glycines utilizes promiscuous spliced leaders and demonstrates a unique preference for a species-specific spliced leader over C. elegans SL1

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Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam.

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The genomes of root-knot nematodes.

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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.

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Analysis of Drosophila species genome size and satellite DNA content reveals significant differences among strains as well as between species

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Parasitic success without sex – the nematode experience

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7 January 2021

Diversity and evolution of root-knot nematodes, genus Meloidogyne: new insights from the genomic era.

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7 January 2021

A novel Meloidogyne graminicola effector, MgMO237, interacts with multiple host defence-related proteins to manipulate plant basal immunity and promote parasitism.

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7 January 2021

Lateral gene transfers have polished animal genomes: lessons from nematodes

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7 January 2021

Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes

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7 January 2021

Horizontal Gene Transfer from Bacteria Has Enabled the Plant-Parasitic Nematode Globodera pallida to Feed on Host-Derived Sucrose.

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7 January 2021

Spliced leader RNA trans-splicing in metazoa

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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.

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Considering transposable element diversification in de novo annotation approaches

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

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Tm1: a mutator/foldback transposable element family in root-knot nematodes

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7 January 2021

QUAST: quality assessment tool for genome assemblies

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7 January 2021

Horizontal gene transfer in nematodes: a catalyst for plant parasitism?

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7 January 2021

Carboxylesterases: General detoxifying enzymes

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MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

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HISAT: a fast spliced aligner with low memory requirements

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Assembly of long, error-prone reads using repeat graphs

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7 January 2021

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

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7 January 2021

Gene finding in novel genomes

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7 January 2021

A natural barrier to lateral gene transfer from prokaryotes to eukaryotes revealed from genomes: the 70 % rule

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7 January 2021

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

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7 January 2021

BlobTools: Interrogation of genome assemblies

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7 January 2021

Fast gapped-read alignment with Bowtie 2

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7 January 2021

Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences

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7 January 2021

Minimap2: pairwise alignment for nucleotide sequences

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7 January 2021

The Sequence Alignment/Map format and SAMtools

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Intron creation and polyadenylation in maize are directed by AU-rich RNA.

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7 January 2021

The complex hybrid origins of the root knot nematodes revealed through comparative genomics

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7 January 2021

Meloidogyne graminicola: a major threat to rice agriculture.

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7 January 2021

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

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7 January 2021

The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes

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7 January 2021

Rooibos (Aspalathus linearis) Genome Size Estimation Using Flow Cytometry and K-Mer Analyses

1 reference

7 January 2021

The Meloidogyne graminicola effector Mg16820 is secreted in the apoplast and cytoplasm to suppress plant host defense responses

1 reference

7 January 2021

BEDOPS: high-performance genomic feature operations

1 reference

7 January 2021

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

1 reference

7 January 2021

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes

1 reference

7 January 2021

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

1 reference

7 January 2021

Elucidating the molecular bases of epigenetic inheritance in non-model invertebrates: the case of the root-knot nematode Meloidogyne incognita.

1 reference

7 January 2021

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

1 reference

7 January 2021

Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants

1 reference

7 January 2021

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

7 January 2021

Alienness: Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life.

1 reference

7 January 2021

Purge Haplotigs: allelic contig reassignment for third-gen diploid genome assemblies

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7 January 2021

Function of a laminin_G_3 module as a carbohydrate-binding module in an arabinofuranosidase from Ruminiclostridium josui

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7 January 2021

Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach

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7 January 2021

The Role of Transposable Elements in Speciation.

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7 January 2021

Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-infected tomato (Solanum lycopersicum) roots reveals complex gene expression profiles and metabolic networks of both host and nematode during susceptible and resistance responses

1 reference

7 January 2021

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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7 January 2021

Nematode Genome Announcement: A Draft Genome for Rice Root-Knot Nematode, Meloidogyne graminicola

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7 January 2021

Genome sequence of the root-knot nematode Meloidogyne luci

1 reference

7 January 2021

Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change

1 reference

7 January 2021

Genome sequence of the nematode C. elegans: a platform for investigating biology

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7 January 2021

Meloidogyne graminicola protein disulfide isomerase may be a nematode effector and is involved in protection against oxidative damage

1 reference

7 January 2021

A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences

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7 January 2021

Fast and accurate de novo genome assembly from long uncorrected reads.

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7 January 2021

Bacterial peptidoglycan (murein) hydrolases

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7 January 2021

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7 January 2021

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

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7 January 2021

InterProScan--an integration platform for the signature-recognition methods in InterPro

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7 January 2021

The Role of Sugar Transporter Genes during Early Infection by Root-Knot Nematodes.

1 reference

7 January 2021

A Meloidogyne graminicola C-type lectin, Mg01965 is secreted into the host apoplast to suppress plant defense and promote parasitism

1 reference

7 January 2021

The MaSuRCA genome assembler

1 reference

7 January 2021