A core promoter hairpin is essential for subgenomic RNA synthesis in alfalfa mosaic alfamovirus and is conserved in other Bromoviridae (Q77930086)

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scientific article published on 01 January 1998

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English	A core promoter hairpin is essential for subgenomic RNA synthesis in alfalfa mosaic alfamovirus and is conserved in other Bromoviridae	scientific article published on 01 January 1998

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scholarly article

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Europe PubMed Central

PubMed publication ID

9926399

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

review article

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Europe PubMed Central

title

A core promoter hairpin is essential for subgenomic RNA synthesis in alfalfa mosaic alfamovirus and is conserved in other Bromoviridae (English)

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stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

main subject

Bromoviridae

object named as

Bromoviridae

1 reference

based on heuristic

inferred from title

author name string

E M Jaspars

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

publication date

1 January 1998

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stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

published in

Virus Genes

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stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

volume

17

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stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

issue

3

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stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

page(s)

233-242

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

cites work

The complete nucleotide sequence of RNA 3 of a peach isolate of Prunus necrotic ringspot virus

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nucleotide sequence and genome organization of the RNA2 and RNA3 segments in broad bean mottle virus

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cucumber mosaic virus

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The requirement for a 5' stem-loop structure in brome mosaic virus replication supports a new model for viral positive-strand RNA initiation

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

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Bacterial gene inserted in an engineered RNA virus: efficient expression in monocotyledonous plant cells

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Variable repeats and poly (A)-stretches in the leader sequence of alfalfa mosaic virus RNA 3.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of RNA 3 of peanut stunt cucumovirus

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of alfalfa mosaic virus coat protein in regulation of the balance between viral plus and minus strand RNA synthesis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Role of alfalfa mosaic virus coat protein gene in symptom formation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of tomato aspermy virus RNA 2.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of the protein composition of alfalfa mosaic virus RNA-dependent RNA polymerase

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

cis-acting sequences required for in vivo amplification of genomic RNA3 are organized differently in related bromoviruses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

cis-acting elements involved in replication of alfalfa mosaic virus RNAs in vitro

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved free-energy parameters for predictions of RNA duplex stability

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved predictions of secondary structures for RNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Similarities among plant virus (+) and (-) RNA termini imply a common ancestry with promoters of eukaryotic tRNAs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of the core and modulator sequences of the BMV RNA3 subgenomic promoter

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synthesis of brome mosaic virus subgenomic RNA in vitro by internal initiation on (-)-sense genomic RNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of RNA 3 from Alfalfa mosaic virus, strain S

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of tobacco streak virus RNA 3.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of the brome mosaic virus genome and its implications for viral replication

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of alfalfa mosaic virus RNA3

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequences at the 5'-termini of the alfalfa mosaic virus RNAs and the intercistronic junction in RNA 3.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete nucleotide sequence of brome mosaic virus RNA3

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interaction between RNA-dependent RNA polymerase of alfalfa mosaic virus and its template: oxidation of vicinal hydroxyl groups blocks in vitro RNA synthesis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of sequences controlling the synthesis of alfalfa mosaic virus subgenomic RNA in vivo

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete nucleotide sequence of apple mosaic virus RNA-3

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prunus necrotic ringspot ilarvirus: nucleotide sequence of RNA3 and the relationship to other ilarviruses based on coat protein comparison.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vitro evidence that the coat protein of alfalfa mosaic virus plays a direct role in the regulation of plus and minus RNA synthesis: implications for the life cycle of alfalfa mosaic virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ability of tobacco streak virus coat protein to substitute for late functions of alfalfa mosaic virus coat protein

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence and infectious in vitro transcripts of RNA 3 of tomato aspermy virus pepper isolate

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Early and late functions of alfalfa mosaic virus coat protein can be mutated separately

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete nucleotide sequence of prune dwarf ilarvirus RNA 3: implications for coat protein activation of genome replication in ilarviruses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nucleotide sequence of RNA 3 of the British type isolate (Blencowe strain) of tomato aspermy virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Coat protein stimulates replication complexes of alfalfa mosaic virus to produce virion RNAs in vitro

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

New overlapping gene encoded by the cucumber mosaic virus genome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specific RNA binding by amino-terminal peptides of alfalfa mosaic virus coat protein.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of cis-acting sequences and gene function in RNA3 of cucumber mosaic virus.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of cis-acting elements in the 5' leader sequence of alfalfa mosaic virus RNA 3.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nucleotide sequence of hydrangea mosaic virus RNA 3 exhibits similarity with the RNA 3 of tobacco streak virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural elements of the 3'-terminal coat protein binding site in alfalfa mosaic virus RNAs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In vivo expression of an overlapping gene encoded by the cucumoviruses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The nucleotide sequence of RNA3 and RNA4 of olive latent virus 2.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete nucleotide sequence of RNA 3 of citrus leaf rugose and citrus variegation ilarviruses

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete nucleotide sequence of the RNA 3 of lilac ring mottle ilarvirus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two novel subgenomic RNAs derived from RNA 3 of tomato aspermy cucumovirus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary relationships in the ilarviruses: nucleotide sequence of prunus necrotic ringspot virus RNA 3.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Minimal templates directing accurate initiation of subgenomic RNA synthesis in vitro by the brome mosaic virus RNA-dependent RNA polymerase

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The complete sequence of the genomic RNAs of spinach latent virus

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence-specific recognition of a subgenomic RNA promoter by a viral RNA polymerase

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutations in coat protein binding sites of alfalfa mosaic virus RNA 3 affect subgenomic RNA 4 accumulation and encapsidation of viral RNAs

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The 3' untranslated region of alfalfa mosaic virus RNA3 contains a core promoter for minus-strand RNA synthesis and an enhancer element

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Regulation of single-strand RNA synthesis of alfalfa mosaic virus in non-transgenic cowpea protoplasts by the viral coat protein

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/9926399

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1023/A:1008065704102

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

Dimensions Publication ID

1005662660

0 references

PubMed publication ID

9926399

1 reference

stated in

Europe PubMed Central

PubMed publication ID

9926399

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9926399%20AND%20SRC:MED&resulttype=core&format=json

retrieved

9 December 2019

 

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