Fogarty International Center collaborative networks in infectious disease modeling: lessons learnt in research and capacity building (Q57831138)

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scholarly article published by Edward C. Holmes in 2018

Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building

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English	Fogarty International Center collaborative networks in infectious disease modeling: lessons learnt in research and capacity building	scholarly article published by Edward C. Holmes in 2018	Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building

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scholarly article

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Fogarty International Center collaborative networks in infectious disease modeling: lessons learnt in research and capacity building (English)

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Fogarty International Center collaborative networks in infectious disease modeling: Lessons learnt in research and capacity building (English)

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infectious disease

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research collaboration

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Edward C. Holmes

object named as

Edward C. Holmes

Edward C Holmes

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Lone Simonsen

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James O. Lloyd-Smith

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object named as

James O. Lloyd-Smith

James O Lloyd-Smith

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10

object named as

Cécile Viboud

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9

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Bryan Grenfell

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Andrew Rambaut

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7

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Mark A. Miller

Mark A Miller

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Gerardo Chowell

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object named as

Gerardo Chowell

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author name string

Martha I. Nelson

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David J. Spiro

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publication date

October 2018

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23 October 2018

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Epidemics: the journal of infectious disease dynamics

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Epidemiology. Foot-and-mouth disease under control in the UK.

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Modelling vaccination strategies against foot-and-mouth disease.

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Immunity to influenza: the challenges of protecting an aging population.

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Impact of influenza vaccination on seasonal mortality in the US elderly population.

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Influenza-related mortality in the Italian elderly: No decline associated with increasing vaccination coverage

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The evolutionary emergence of pandemic influenza

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Seasonality of influenza in Brazil: a traveling wave from the Amazon to the subtropics

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The genesis and spread of reassortment human influenza A/H3N2 viruses conferring adamantane resistance

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Phylogenetic analysis reveals the global migration of seasonal influenza A viruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Epidemiologic characterization of the 1918 influenza pandemic summer wave in Copenhagen: implications for pandemic control strategies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The genomic and epidemiological dynamics of human influenza A virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The global circulation of seasonal influenza A (H3N2) viruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Multiple reassortment events in the evolutionary history of H1N1 influenza A virus since 1918

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The evolutionary genetics and emergence of avian influenza viruses in wild birds

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Prioritization of influenza pandemic vaccination to minimize years of life lost.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Molecular epidemiology of A/H3N2 and A/H1N1 influenza virus during a single epidemic season in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The dilemma of influenza vaccine recommendations when applied to the tropics: the Brazilian case examined under alternative scenarios

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The origin and global emergence of adamantane resistant A/H3N2 influenza viruses

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The Signature Features of Influenza Pandemics — Implications for Policy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Plug-and-play inference for disease dynamics: measles in large and small populations as a case study

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Mixed infection and the genesis of influenza virus diversity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Severe respiratory disease concurrent with the circulation of H1N1 influenza.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Bayesian phylogeography finds its roots

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Influenza vaccination and mortality benefits: new insights, new opportunities

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Epidemic dynamics at the human-animal interface.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Adaptive vaccination strategies to mitigate pandemic influenza: Mexico as a case study.

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Adaptive vaccination strategies to mitigate pandemic influenza: Mexico as a case study

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Reconstructing the initial global spread of a human influenza pandemic: A Bayesian spatial-temporal model for the global spread of H1N1pdm

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Phylogeography takes a relaxed random walk in continuous space and time

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Multiyear surveillance for avian influenza virus in waterfowl from wintering grounds, Texas coast, USA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Major increase in human monkeypox incidence 30 years after smallpox vaccination campaigns cease in the Democratic Republic of Congo

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Identifying genetic markers of adaptation for surveillance of viral host jumps

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Global influenza seasonality: reconciling patterns across temperate and tropical regions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Extensive geographical mixing of 2009 human H1N1 influenza A virus in a single university community

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Characterizing the epidemiology of the 2009 influenza A/H1N1 pandemic in Mexico

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The evolution of drug resistance and the curious orthodoxy of aggressive chemotherapy

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Spatial dynamics of human-origin H1 influenza A virus in North American swine

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The need for interdisciplinary studies of historic pandemics

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Natality decline and miscarriages associated with the 1918 influenza pandemic: the Scandinavian and United States experiences

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Impact of the 2009 influenza pandemic on pneumococcal pneumonia hospitalizations in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Explaining seasonal fluctuations of measles in Niger using nighttime lights imagery

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Impact of cross-protective vaccines on epidemiological and evolutionary dynamics of influenza

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Evidence for antigenic seniority in influenza A (H3N2) antibody responses in southern China

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Evolutionary history and attenuation of myxoma virus on two continents

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Quantifying the impact of human mobility on malaria

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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EPIPOI: a user-friendly analytical tool for the extraction and visualization of temporal parameters from epidemiological time series

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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House-to-house human movement drives dengue virus transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Multiple scales of selection influence the evolutionary emergence of novel pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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A systematic review of mathematical models of mosquito-borne pathogen transmission: 1970-2010

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Latitudinal variations in seasonal activity of influenza and respiratory syncytial virus (RSV): a global comparative review

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The global distribution and burden of dengue

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Inference of R(0) and transmission heterogeneity from the size distribution of stuttering chains

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Identifying the interaction between influenza and pneumococcal pneumonia using incidence data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Comparing methods for estimating R0 from the size distribution of subcritical transmission chains.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Pneumococcal disease seasonality: incidence, severity and the role of influenza activity

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Aggressive chemotherapy and the selection of drug resistant pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Real-time influenza forecasts during the 2012-2013 season

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Minimizing the threat of pandemic emergence from avian influenza in poultry systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Characterization of regional influenza seasonality patterns in China and implications for vaccination strategies: spatio-temporal modeling of surveillance data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Mortality attributable to influenza in England and Wales prior to, during and after the 2009 pandemic.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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A synchronized global sweep of the internal genes of modern avian influenza virus.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Recasting the theory of mosquito-borne pathogen transmission dynamics and control

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Socially structured human movement shapes dengue transmission despite the diffusive effect of mosquito dispersal

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Big data. The parable of Google Flu: traps in big data analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Phylodynamic inference for structured epidemiological models

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Identifying postelimination trends for the introduction and transmissibility of measles in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Incidence and risk factors for influenza-like-illness in the UK: online surveillance using Flusurvey

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Spatial Transmission of 2009 Pandemic Influenza in the US

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Theory and data for simulating fine-scale human movement in an urban environment

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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The path of least resistance: aggressive or moderate treatment?

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Synthesizing data and models for the spread of MERS-CoV, 2013: key role of index cases and hospital transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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West African Ebola epidemic after one year--slowing but not yet under control

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Association between respiratory syncytial virus activity and pneumococcal disease in infants: a time series analysis of US hospitalization data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Inference and forecast of the current west african ebola outbreak in Guinea, sierra leone and liberia

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Effectiveness of traveller screening for emerging pathogens is shaped by epidemiology and natural history of infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Influenza seasonality in Madagascar: the mysterious African free-runner

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Temporal Changes in Ebola Transmission in Sierra Leone and Implications for Control Requirements: a Real-time Modelling Study

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reduced vaccination and the risk of measles and other childhood infections post-Ebola

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Modeling infectious disease dynamics in the complex landscape of global health

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Global migration of influenza A viruses in swine

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Eight challenges in modelling disease ecology in multi-host, multi-agent systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Nine challenges in modelling the emergence of novel pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Five challenges in evolution and infectious diseases

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Seven challenges in modeling pathogen dynamics within-host and across scales

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Eight challenges in phylodynamic inference.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Six challenges in modelling for public health policy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Six challenges in the eradication of infectious diseases

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Challenges in modelling infectious disease dynamics: preface

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Measurably evolving pathogens in the genomic era

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Transmission Potential of Influenza A(H7N9) Virus, China, 2013-2014.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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The role of superspreading in Middle East respiratory syndrome coronavirus (MERS-CoV) transmission

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Imperfect Vaccination Can Enhance the Transmission of Highly Virulent Pathogens

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Forecasting Influenza Epidemics in Hong Kong

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Mapping influenza transmission in the ferret model to transmission in humans.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Lessons from Ebola: Improving infectious disease surveillance to inform outbreak management

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Measuring the impact of Ebola control measures in Sierra Leone

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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The role of influenza in the epidemiology of pneumonia

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Transmission network of the 2014-2015 Ebola epidemic in Sierra Leone

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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A global map of hemispheric influenza vaccine recommendations based on local patterns of viral circulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Mathematical modeling of the West Africa Ebola epidemic

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Mapping residual transmission for malaria elimination

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Anticipating the international spread of Zika virus from Brazil

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Potential drivers of virulence evolution in aquaculture

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Real-time, portable genome sequencing for Ebola surveillance

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Viral factors in influenza pandemic risk assessment.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Exposure Patterns Driving Ebola Transmission in West Africa: A Retrospective Observational Study

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Potent protection against H5N1 and H7N9 influenza via childhood hemagglutinin imprinting

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Forecasting Influenza Outbreaks in Boroughs and Neighborhoods of New York City

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Universal or Specific? A Modeling-Based Comparison of Broad-Spectrum Influenza Vaccines against Conventional, Strain-Matched Vaccines

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inferring infection hazard in wildlife populations by linking data across individual and population scales

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Human mobility and the spatial transmission of influenza in the United States

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Virus genomes reveal factors that spread and sustained the Ebola epidemic

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

based on heuristic

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Establishment and cryptic transmission of Zika virus in Brazil and the Americas

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Pathways to zoonotic spillover.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Influenza seasonality goes south in the Yucatan Peninsula: The case for a different influenza vaccine calendar in this Mexican region

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Connecting Mobility to Infectious Diseases: The Promise and Limits of Mobile Phone Data

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Infectious Disease Surveillance in the Big Data Era: Towards Faster and Locally Relevant Systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Big Data for Infectious Disease Surveillance and Modeling

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The RAPIDD ebola forecasting challenge: Synthesis and lessons learnt

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Predictive Modeling of Influenza Shows the Promise of Applied Evolutionary Biology.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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The RAPIDD Ebola forecasting challenge special issue: Preface

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https://pubmed.ncbi.nlm.nih.gov/30446431

12 December 2020

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Identifiers

10.1016/J.EPIDEM.2018.10.004

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