Rapid Low-Cost Assembly of the Reference Genome Using Low-Coverage, Long-Read Sequencing (Q57036666)

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scientific article published on 03 October 2018

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English	Rapid Low-Cost Assembly of the Reference Genome Using Low-Coverage, Long-Read Sequencing	scientific article published on 03 October 2018

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scholarly article

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12 April 2020

Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing (English)

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12 April 2020

molecular biology

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Edwin S Solares

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12 April 2020

Mahul Chakraborty

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12 April 2020

Danny E. Miller

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12 April 2020

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12 April 2020

R. Scott Hawley

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12 April 2020

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Shannon Kalsow

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12 April 2020

Kate Hall

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12 April 2020

Anoja G Perera

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3 October 2018

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12 April 2020

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12 April 2020

8

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12 April 2020

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12 April 2020

3143-3154

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12 April 2020

describes a project that uses

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MUMmer

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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ggplot

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Nanopore sequencing and assembly of a human genome with ultra-long reads.

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Hidden genetic variation shapes the structure of functional elements in Drosophila.

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Deep sequencing of natural and experimental populations of Drosophila melanogaster reveals biases in the spectrum of new mutations.

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Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation

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DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

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Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage

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An Incomplete Understanding of Human Genetic Variation

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Long-read sequence assembly of the gorilla genome

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Unique transposon landscapes are pervasive across Drosophila melanogaster genomes

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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2 November 2018

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing

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Long-read, whole-genome shotgun sequence data for five model organisms

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The challenge of small-scale repeats for indel discovery

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The Release 6 reference sequence of the Drosophila melanogaster genome.

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Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement

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FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

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2 November 2018

Near-optimal assembly for shotgun sequencing with noisy reads

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2 November 2018

Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements

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2 November 2018

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

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2 November 2018

Optimal assembly for high throughput shotgun sequencing

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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

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QUAST: quality assessment tool for genome assemblies

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Population Genomics of sub-saharan Drosophila melanogaster: African diversity and non-African admixture

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MITOS: improved de novo metazoan mitochondrial genome annotation

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Fast gapped-read alignment with Bowtie 2

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GAGE: A critical evaluation of genome assemblies and assembly algorithms

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Repetitive DNA and next-generation sequencing: computational challenges and solutions

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Genome structural variation discovery and genotyping

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Limitations of next-generation genome sequence assembly

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Genomic instability of I elements of Drosophila melanogaster in absence of dysgenic crosses

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De novo assembly of short sequence reads

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BEDTools: a flexible suite of utilities for comparing genomic features

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

1 reference

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Initial sequencing and analysis of the human genome

1 reference

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A whole-genome assembly of Drosophila

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The genome sequence of Drosophila melanogaster

1 reference

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The evolutionary genetics of the hobo transposable element in the Drosophila melanogaster complex

1 reference

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Basic local alignment search tool

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1 reference

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2 November 2018

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10.1534/G3.118.200162

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30018084%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

PMC publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30018084%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

PubMed publication ID

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30018084%20AND%20SRC:MED&resulttype=core&format=json

12 April 2020

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