Three sequence rules for chromatin (Q48098895)

8 February 2018

title

Three sequence rules for chromatin (English)

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8 February 2018

author name string

Amir B Cohanim

series ordinal

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8 February 2018

Yechezkel Kashi

series ordinal

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8 February 2018

Edward N Trifonov

series ordinal

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8 February 2018

publication date

1 April 2006

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8 February 2018

Journal of Biomolecular Structure and Dynamics

published in

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8 February 2018

volume

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8 February 2018

issue

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8 February 2018

page(s)

559-566

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8 February 2018

The arrangement of nucleosomes in nucleoprotein complexes from polyoma virus and SV40

cites work

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https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Structure, dynamics, and function of chromatin in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

The nucleosome: from genomic organization to genomic regulation

21 January 2018

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https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

What positions nucleosomes?--A model

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

The pitch of chromatin DNA is reflected in its nucleotide sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

10-11 bp periodicities in complete genomes reflect protein structure and DNA folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Periodicities of 10-11bp as indicators of the supercoiled state of genomic DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Yeast nucleosome DNA pattern: deconvolution from genome sequences of S. cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Sequence-dependent deformational anisotropy of chromatin DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Organization of spacer DNA in chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Self-assembly of single and closely spaced nucleosome core particles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Diversity in G + C content at the third position of codons in vertebrate genes and its cause

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Codon usage in plant genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Folding of the MS2 coat protein in Escherichia coli is modulated by translational pauses resulting from mRNA secondary structure and codon usage: a hypothesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Consecutive low-usage leucine codons block translation only when near the 5' end of a message in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16 S rRNA nucleotide sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Periodicity in alpha-helix lengths and C-capping preferences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Sequence and structure patterns in proteins from an analysis of the shortest helices: implications for helix nucleation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Amino acid propensities are position-dependent throughout the length of alpha-helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Energetics of DNA twisting. II. Topoisomer analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

DNA sequence-directed nucleosome reconstitution on 5S RNA genes of Xenopus laevis

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Helical repeat of DNA in solution. The V curve method

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Periodicity of deoxyribonuclease I digestion of chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

DNase II digestion of the nucleosome core: precise locations and relative exposures of sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Periodicity of exonuclease III digestion of chromatin and the pitch of DNA on the nucleosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Sequence periodicities in chicken nucleosome core DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

UV-induced formation of pyrimidine dimers in nucleosome core DNA is strongly modulated with a period of 10.3 bases

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

Sequence dependence of the helical repeat of DNA in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F07391102.2006.10507081

10.1080/07391102.2006.10507081

21 January 2018

Identifiers

DOI

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8 February 2018

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8 February 2018