Computational discovery of gene modules and regulatory networks (Q44615395)

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scientific article published on 12 October 2003

Language	Label	Description	Also known as
English	Computational discovery of gene modules and regulatory networks	scientific article published on 12 October 2003

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 December 2017

Computational discovery of gene modules and regulatory networks (English)

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4 December 2017

1

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Nicola J Rinaldi

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Ernest Fraenkel

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4 December 2017

Tommi S. Jaakkola

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object named as

Tommi S Jaakkola

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Richard A. Young

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Richard A Young

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author name string

Georg K Gerber

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4 December 2017

Tong Ihn Lee

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4 December 2017

Jane Y Yoo

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François Robert

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D Benjamin Gordon

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4 December 2017

David K Gifford

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publication date

12 October 2003

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4 December 2017

Nature Biotechnology

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4 December 2017

21

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11

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1337-1342

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4 December 2017

Cluster analysis and display of genome-wide expression patterns

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Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

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Revealing modular organization in the yeast transcriptional network.

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Identifying regulatory networks by combinatorial analysis of promoter elements

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Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

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Transcriptional regulatory networks in Saccharomyces cerevisiae

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MIPS: a database for genomes and protein sequences

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The GCR1 gene encodes a positive transcriptional regulator of the enolase and glyceraldehyde-3-phosphate dehydrogenase gene families in Saccharomyces cerevisiae

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Glycolytic gene expression in Saccharomyces cerevisiae: nucleotide sequence of GCR1, null mutants, and evidence for expression

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Identification and characterization of HAP4: a third component of the CCAAT-bound HAP2/HAP3 heteromer

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TRANSFAC: transcriptional regulation, from patterns to profiles

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Tor signalling in bugs, brain and brawn

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Elucidating TOR signaling and rapamycin action: lessons from Saccharomyces cerevisiae

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The target of rapamycin (TOR) proteins

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Rapamycin-modulated transcription defines the subset of nutrient-sensitive signaling pathways directly controlled by the Tor proteins

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Partitioning the transcriptional program induced by rapamycin among the effectors of the Tor proteins

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The TOR signaling cascade regulates gene expression in response to nutrients

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The control of the yeast H2O2 response by the Msn2/4 transcription factors.

1 reference

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The transcriptional response of Saccharomyces cerevisiae to osmotic shock. Hot1p and Msn2p/Msn4p are required for the induction of subsets of high osmolarity glycerol pathway-dependent genes.

1 reference

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Transcriptional control of nonfermentative metabolism in the yeast Saccharomyces cerevisiae

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7 January 2021

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The TOR-controlled transcription activators GLN3, RTG1, and RTG3 are regulated in response to intracellular levels of glutamine

1 reference

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7 January 2021

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Mechanism of metabolic control. Target of rapamycin signaling links nitrogen quality to the activity of the Rtg1 and Rtg3 transcription factors

1 reference

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7 January 2021

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RTG1 and RTG2: two yeast genes required for a novel path of communication from mitochondria to the nucleus

1 reference

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7 January 2021

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Cloning and molecular analysis of the HAP2 locus: a global regulator of respiratory genes in Saccharomyces cerevisiae

1 reference

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The CCAAT box-binding factor stimulates ammonium assimilation in Saccharomyces cerevisiae, defining a new cross-pathway regulation between nitrogen and carbon metabolisms.

1 reference

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Cloning of the ASN1 and ASN2 genes encoding asparagine synthetases in Saccharomyces cerevisiae: differential regulation by the CCAAT-box-binding factor

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Network motifs in the transcriptional regulation network of Escherichia coli

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7 January 2021

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Gat1p, a GATA family protein whose production is sensitive to nitrogen catabolite repression, participates in transcriptional activation of nitrogen-catabolic genes in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1038%2FNBT890

7 January 2021

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Europe PubMed Central

PubMed publication ID

4 December 2017

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4 December 2017

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