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LOC127968264 peroxisome proliferator-activated receptor gamma-like [ Carassius gibelio (silver crucian carp) ]

Gene ID: 127968264, updated on 28-May-2024

Summary

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Gene symbol
LOC127968264
Gene description
peroxisome proliferator-activated receptor gamma-like
See related
EnsemblRapid:ENSCGBG00020005405
Gene type
protein coding
RefSeq status
MODEL
Organism
Carassius gibelio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius
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Genomic context

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See LOC127968264 in Genome Data Viewer
Location:
chromosome: B11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_02 current carGib1.2-hapl.c (GCF_023724105.1) B11 NC_068406.1 (5944701..5978989)

Chromosome B11 - NC_068406.1Genomic Context describing neighboring genes Neighboring gene synapsin-2-like Neighboring gene metalloproteinase inhibitor 3-like Neighboring gene metalloproteinase inhibitor 3-like Neighboring gene uncharacterized LOC127968071 Neighboring gene metalloproteinase inhibitor 4-like Neighboring gene MKRN2 opposite strand, tandem duplicate 2 Neighboring gene MKRN2 opposite strand, tandem duplicate 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_068406.1 Chromosome B11 Reference carGib1.2-hapl.c Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_023724105.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference carGib1.2-hapl.c Primary Assembly

Genomic

  1. NC_068406.1 Reference carGib1.2-hapl.c Primary Assembly

    Range
    5944701..5978989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_052569342.1 → XP_052425302.1  peroxisome proliferator-activated receptor gamma-like isoform X2

  2. XM_052569341.1 → XP_052425301.1  peroxisome proliferator-activated receptor gamma-like isoform X2

    Related
    ENSCGBP00020012810.1, ENSCGBT00020013583.1

  3. XM_052569339.1 → XP_052425299.1  peroxisome proliferator-activated receptor gamma-like isoform X1

    Related
    ENSCGBP00020012820.1, ENSCGBT00020013593.1
Nucleotide Protein
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