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pparg peroxisome proliferator-activated receptor gamma [ Amphiprion ocellaris (clown anemonefish) ]

Gene ID: 111564578, updated on 18-Jun-2024

Summary

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Gene symbol
pparg
Gene description
peroxisome proliferator-activated receptor gamma
See related
Ensembl:ENSAOCG00000022233
Gene type
protein coding
RefSeq status
MODEL
Organism
Amphiprion ocellaris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Amphiprion
Orthologs
human zebrafish all
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Genomic context

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See pparg in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current ASM2253959v1 (GCF_022539595.1) 5 NC_072770.1 (34376537..34414555)
101 previous assembly AmpOce1.0 (GCF_002776465.1) Unplaced Scaffold NW_019376177.1 (141044..179092, complement)

Chromosome 5 - NC_072770.1Genomic Context describing neighboring genes Neighboring gene TAM41 mitochondrial translocator assembly and maintenance homolog Neighboring gene synapsin IIb Neighboring gene metalloproteinase inhibitor 4 Neighboring gene telomeric repeat binding factor 2, interacting protein Neighboring gene intermediate filament family orphan 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxisome proliferator-activated receptor gamma

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_022539595.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2253959v1 Primary Assembly

Genomic

  1. NC_072770.1 Reference ASM2253959v1 Primary Assembly

    Range
    34376537..34414555
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023264231.3 → XP_023119999.1  peroxisome proliferator-activated receptor gamma

    UniProtKB/TrEMBL
    A0A3Q1BUC8, A0A3Q1BW91
    Related
    ENSAOCP00000017159.1, ENSAOCT00000026350.2
    Conserved Domains (3) summary
    cd06932
    Location:250 → 566
    NR_LBD_PPAR; The ligand binding domain of peroxisome proliferator-activated receptors
    cd06965
    Location:151 → 234
    NR_DBD_Ppar; DNA-binding domain of peroxisome proliferator-activated receptors (PPAR) is composed of two C4-type zinc fingers
    pfam12577
    Location:20 → 122
    PPARgamma_N; PPAR gamma N-terminal region
Nucleotide Protein
Heading Accession and Version

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