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LOC106609937 melatonin receptor type 1A-A-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106609937, updated on 3-Dec-2024

Summary

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Gene symbol
LOC106609937
Gene description
melatonin receptor type 1A-A-like
See related
Ensembl:ENSSSAG00000041844
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106609937 in Genome Data Viewer
Location:
chromosome: ssa08
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa08 NC_059449.1 (6175476..6234380, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa08 NC_027307.1 (1734254..1793063)

Chromosome ssa08 - NC_059449.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene protocadherin Fat 1-like Neighboring gene uncharacterized LOC106609938 Neighboring gene cytochrome P450 4V2-like Neighboring gene toll-like receptor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables melatonin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
melatonin receptor type 1A-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059449.1 Reference Ssal_v3.1

    Range
    6175476..6234380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045722669.1 → XP_045578625.1  melatonin receptor type 1A-A-like

    UniProtKB/TrEMBL
    A0A1S3SJC8
    Related
    ENSSSAP00000155713.1, ENSSSAT00000223633.1
Nucleotide Protein
Heading Accession and Version

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