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Oncorhynchus nerka (sockeye salmon): 115103507
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Entry
115103507 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 2B-like
KO
K05210
glutamate receptor ionotropic, NMDA 2B
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04020
Calcium signaling pathway
one04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
one00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
115103507
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
one04040
]
115103507
Ion channels [BR:
one04040
]
Ligand-gated channels
Glutamate (ionotropic)
115103507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NMDAR2_C
Lig_chan
Lig_chan-Glu_bd
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
115103507
NCBI-ProteinID:
XP_029480200
LinkDB
All DBs
Position
LG21:24987826..25022300
Genome browser
AA seq
1402 aa
AA seq
DB search
SLSLSLCLSAGLISVSYDEWDYGLEARVRDGVAVIAMATSTMMLDRGAHTLMKSECHGAT
DKKGPIAGNPNEVLSVLCPSPRFSYPVCCVSQSSFLLPSVLCVPVLVSPTQCAVCPSPRL
WLLYAQPPADVGKWENGSLSMKYHVWPRFEIYSGAESREDDHLSIVTLEEAPFVIVEDVD
PLSGTCMRNTVPCRRQLQTMLAGNKTVDSGIYIKRCCKGFCIDILKKIAKHVKFTYDLYL
VTNGKHGKKINGTWNGMVGEVETKKAHMAVGSLTINKERSEVIDFSVPFIETGISVMVSR
SNGTVSPSAFLEPFSADVWVMMFVMLLLVSAIAVFVFEYLSPVGYNRCLADGREPGGPSF
TIGKAIWLLWGLVFNNSVPVQNPKGWTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEYV
DQVSGLSDKKFQRPNDFSPPFRFGTVPNGSTERNIKNNYKEMHGYMIKFHQKNVDEALYG
LKTGKLDAFIYDAAVLNYMAGRDEGCKLVTIGSGKVFASTGYGIAIQKESGWKRHVDLAI
LQLFGDGDMEELEAMWLTGICHHEKNEVMSSQLDVDNMAGVFYMLGAAMALSLITFIAEH
AFYWQLRFCFMGYCTGKPGFVFSISRGIYSCIHGVQIEEKSSSALDSPSVTMNNTQSNIL
RLLRTAKNMASLSGVNGSPHSALDFIRRESSVYDISEHRRSLAGHSDCKPPYMPEDNMFS
DYINEVERTFGNLHLKDSNLYQDHYLHHHGGSALGLSGPPLNRPHSLGSNSSLEGGMFDC
DSLGGGVAPIFTTQPRSALTHRNMSKFDLIASQNLPSGPGFKSGLSDLYGKFSFKGGASS
SGYIPGHDRYCGGGGREDDGNIRSDVSDISTHTVTYGNLEGNAKKRKQYRDSLKKRPASA
KSRRELDEIELGYRRKPYHTGYHHYHGHRASSPPLLASERKRGGGGNAGSTSYLFRDKES
VRDFYLDQFRPKDGVPQWEHVDLTDGPGGGGGGGGGNCTSLVSVDDFLKQNKPKKSESKS
GGGTSGAGLAGGDWECRNCRASGGGGKQMLMHGSGAGERGGGYGGGVSCGSSVGGGNSRP
SSATCMRCEGCKKTGNLYDISEDNNHLLEQMGGGKGGGMGAVGLSGGAQPQSQAQRRKSA
GFGKPLRRQHSCDTFVDLQKEEAVGVRGVMGDLGGGGGGMGGAGMSGMLPPPRSVSLKEK
ERYMEGVSPFAHIFERHGGSEREKERDRDPLFYGGEMAKEAGSPFGLFRGGEGLHRRSVG
ERDMRGRERAMMEGGGGGTYSLSKSLYPDRVNQNPFIPTFGDDQCLLHGAKQYYMKKQQQ
QQQQMPPKNSRSDFRGSVGVTSFLPATATAGVMSTVAPRFPMDLCLGGNLHGSTLGVGPI
QRPFNGSNGHVYEKLSSIESDV
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
tctctctctctctctctctgtctctctgcaggtttaatctctgtgtcgtatgatgagtgg
gactacggcctggaggctcgcgtgcgcgatggggtggctgtcatcgccatggcaacctcc
accatgatgctcgacaggggggcacacaccctgatgaagtctgagtgccacggggccacg
gacaagaaggggcccattgctgggaacccaaatgaggtgctcagtgtgctgtgtcccagt
cctcgtttctcctacccagtgtgctgtgtgtcccagtcctcgtttctcctacccagtgtg
ctgtgtgtcccagtcctcgtttctcctacccagtgtgctgtgtgtcccagtcctcgtctc
tggttgctctatgcccaaccgcctgctgacgtggggaagtgggagaacggctccctgtcc
atgaagtaccacgtctggcctcgctttgagatctactcaggggcagagagccgggaggac
gaccacctttccatcgttacgctggaggaggctccgtttgtcatcgtggaggacgttgac
cccctcagtggcacgtgtatgaggaacactgtgccctgcaggagacagctccaaacaatg
ctagcgggaaataaaaccgttgactctgggatctatatcaagcgctgctgtaagggtttc
tgcatcgacatcctgaagaaaatcgccaagcacgtcaagttcacctacgacctctacctg
gtgaccaacggaaaacacggcaagaagatcaacggcacctggaacggcatggtgggagag
gtggagacgaagaaggcccacatggctgtgggctccctcaccatcaacaaggagaggtca
gaggtcattgacttctcggttcccttcatcgagacaggcatcagcgtcatggtatcccgt
agcaacggcaccgtctcgccctctgccttcctcgagcccttcagtgctgatgtgtgggtg
atgatgttcgtgatgctgctgctggtttcggcgattgctgtgtttgtgtttgagtacctc
agccctgtgggctacaaccgctgtctggccgacggtagagagcctggagggccctccttc
accatcggcaaggccatctggctgctgtggggtctggtcttcaacaactctgtcccagtg
cagaaccccaagggttggaccagtaagatcatggtgtcggtgtgggccttcttcgctgtc
atcttcctggcctcctacactgccaacctggcagccttcatgatccaggaggagtatgtg
gaccaggtgtctggactcagcgacaagaagtttcagagacccaatgacttctcccctccg
ttccggtttgggacggtccctaacggcagcacggaaaggaacatcaagaacaactacaag
gagatgcatggctacatgatcaagttccaccagaagaatgtggatgaggccctgtatggt
ctgaagactggtaaactggacgccttcatctacgacgcagcagtgctgaactacatggcc
gggagggacgagggctgtaagctggtgaccatcggcagtgggaaggtgtttgcctccacg
ggctacggcatcgccatccagaaggagtctggctggaagagacacgtcgacctggccatc
cttcagctctttggagacggtgacatggaggagctggaggccatgtggctgacggggatc
tgccaccatgagaagaacgaggtgatgagcagccagctggacgtggacaacatggccggc
gtcttctacatgctgggggcggccatggctctgtcgctcatcaccttcatcgccgagcac
gccttctactggcaactgcgcttctgcttcatgggctactgcacgggcaagccaggcttc
gtcttctccatcagcaggggcatctacagctgcatccacggggttcagatcgaagagaag
agcagctcagctctcgactctccatcggtcaccatgaacaacacccaatccaacatcctg
cgtctgctccgaaccgctaagaacatggcctccctgtccggggttaacggctcgcctcac
agcgccctggacttcatccgtcgtgagtcatccgtctacgacatctccgagcaccgccgc
agcctggcaggtcactcggactgcaagcccccgtacatgccggaggataacatgttcagc
gactacatcaacgaggtggagaggacgttcgggaacctccacctgaaggacagcaacctg
taccaggaccactacctgcaccaccacggaggctctgccctggggctcagcggcccgcca
cttaacagaccccacagcctgggcagcaatagctctctggaagggggcatgtttgactgt
gacagtttaggtggaggagtggcacccatcttcaccacccagccacgctctgccctgacc
cacaggaacatgagtaagtttgacctgattgccagtcagaacctaccctccgggccgggc
ttcaaatcgggactgtcagacctgtacggaaagttctccttcaagggaggggcctctagc
tcaggttacatccccgggcacgacaggtactgtgggggagggggcagagaggatgacgga
aacatccgttcagatgtttcagacatctccactcacactgtcacctacgggaacctggag
ggcaacgctaaaaagcgtaagcagtatcgcgacagcctgaaaaagaggcccgcctcggcc
aagtcgagacgagagctggatgagattgagctgggctaccggagaaagccctaccacaca
ggctaccaccactaccatggccatcgcgcctcctccccgcccctactggcctccgaacgc
aagagaggaggaggcggcaatgcagggagcacatcctacctgttccgtgacaaagagagt
gtgagggatttctatttggaccagttccgccccaaagatggtgtcccgcaatgggaacat
gtggatctgacagacggtcctggaggggggggtggaggcggcggggggaactgtacaagt
ttggtgtcagtggacgacttcctgaaacaaaataaacccaagaaatcagagtctaagagt
gggggaggcacatcaggggcggggttggcaggaggagactgggagtgtcgaaactgccgt
gccagcggaggagggggcaagcagatgttgatgcatggcagcggggcgggggagagggga
ggcggatatggtggaggggttagttgtggatcctcggtgggtggagggaacagccgtccc
agctctgccacctgcatgcgctgcgagggctgcaaaaagacaggcaacctgtacgacatc
agtgaggacaacaaccacctcttggaacagatggggggtgggaaaggcggaggcatgggg
gctgtggggttaagtggaggcgcccagcctcaatctcaagcccagcggaggaagtctgcc
ggctttggaaagcccctccgacggcaacactcgtgcgacaccttcgtagaccttcagaaa
gaagaggcagtcggagtcaggggggtcatgggggatctaggagggggcggtgggggcatg
gggggtgcaggaatgagcgggatgttgcctcctcccagaagtgttagcttaaaagagaag
gagcgctatatggagggtgttagccccttcgcccacatatttgagaggcatggaggctca
gagagggagaaggagcgagacagagaccctctgttctatggtggtgagatggccaaagaa
gcagggtcgccattcggcttgttccgaggtggtgagggccttcaccgccgctcagtgggg
gagagggacatgaggggcagagaaagagccatgatggagggcggtggaggaggaacctac
tccttatccaaatctctctacccagatagggtcaaccaaaacccctttattccaaccttt
ggtgacgaccagtgtctcttgcatggcgccaaacaatactacatgaaaaagcaacaacag
cagcagcagcagatgcccccaaaaaacagccgaagtgacttccggggctccgtgggtgtg
acatctttcttgccagcgactgccactgctggggtcatgtccactgtggcccccaggttc
cctatggacctgtgtctgggagggaacctccacggctccacgctgggtgtggggccaata
cagcgcccgttcaatggcagcaacgggcacgtgtacgagaaactctccagcatagagtca
gacgtgtga
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