Happy Holidays & Happy New Year from the EMDB team! During this period (23rd December - 6th January) the EMDB team and our OneDep curators will be working at reduced capacity. We will continue to run the weekly release of entries as normal, but entry annotation & support may be slower than usual. Thanks for your understanding.
The Electron Microscopy Data Bank (EMDB) is a public repository for cryogenic-sample Electron Microscopy (cryoEM) volumes and representative tomograms of macromolecular complexes and subcellular structures. It covers a variety of techniques, including single-particle analysis, helical reconstruction, electron tomography, subtomogram averaging, and electron crystallography. More...
As of 25 December 2024, EMDB contains 41284 entries (latest entries, trends).
EMDB News
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06 January 2024: We are delighted to share that EMDB has officially been elevated to a Core Data Resource by ELIXIR, recognising it as a European data resource of fundamental importance to the wider life-science community and the long-term preservation of biological data.
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22 November 2023: We are happy to share the most recent version of the EMDB Nucleic Acids Research paper. The paper describes recent developments and future plans of the EMDB in the context of the worldwide Protein Data Bank. Check it out now! https://doi.org/10.1093/nar/gkad1019
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Recent Entries
(Show all)CryoEM structure of BAM in complex with the PTB2 open-state inhibitor (in SMA nanodisc)
Yeast post-catalytic P complex spliceosome, focussed refinement on the U2 snRNP
Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2
The structure of the native cardiac thin filament in calcium free conditions in the presence of Lmod2
Yeast post-catalytic P complex spliceosome, state III, overall map
Yeast post-catalytic P complex spliceosome, focussed refinement on the NTC
CryoEM structure of BAM in complex with the PTB1 closed-state inhibitor (in DDM detergent)
cryo-EM structure of human Cereblon/DDB1 in complex with a non-traditional CRBN binder
Yeast post-catalytic P complex spliceosome, focussed refinement on the Cwc22 N-terminal domain
Cryo-EM structure of PGDM1400 Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
A focused refinement map of the flagellar collar of an flcC deletion mutant strain of Borreliella burgdorferi
Cryo-EM structure of PGT145 R100aS Fab bound to HIV-1 BG505 DS-SOSIP.664 Env trimer
A focused refinement structure of the flagellar collar of a flcA deletion mutant of Borreliella burgdorferi
Middle Region of Apolipoprotein B 100 bound to Low Density Lipoprotein Receptor
Yeast post-catalytic P complex spliceosome, focussed refinement on the U5 snRNP Sm ring
Influenza A virus Hemagglutinin H5/Vietnam/1204/2004 in complex with D04 Fab
Yeast post-catalytic P complex spliceosome, focussed refinement on Prp22
Cryo-EM structure of human ABC transporter (hABCC1) bound to cGAMP
Cryo-EM structure of a photosystem I variant containing an unusual plastoquinone derivative in its electron transfer chain
A focused refinement map of the Borreliella burgdorferi flagellar collar
Cryo-EM structure of human ABC transporter (hABCC1) with nucleotide-binding domain 2
Cryo-EM structure of prefusion-stabilized influenza B hemagglutinin
A focused refinement map of the flagellar collar of a Borreliella burgdorferi flcB mutant
Cryo-EM structure of human insulin receptor bound to 4 IGF-I, conformation 2
Cryo-EM structure of alpha/beta hydrolase DANGEROUS MIX 3 (DM3) forms compartmentalized hexamer structure
Cryo-EM structure of human insulin receptor bound to 4 IGF-I, conformation 3
Cryo-EM structure of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Local refinement map of the TRD and CTD regions of BrxX and two Ocr molecules in the BrxX-Ocr complex
Local CryoEM structure of the SARS-CoV-2 BA.5 in complex with ORB10 Fab
Focused map for area 3 of type III CRISPR-associated deaminase in complex cA4
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF23694-bound state
Focused map for area 1 of type III CRISPR-associated deaminase in complex cA4
Focused map for area 2 of type III CRISPR-associated deaminase in complex cA6 and ATP, fully activated
The composite map of E. coli BrxX methyltransferase in complex with Ocr resolved by cryo-EM
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in Metyltetraprole-bound state
Local refinement map of the NTD and MTD regions of BrxX in the BrxX-Ocr complex
Raw consensus map of type III CRISPR-associated deaminase in complex cA4
Focused map for area 3 of type III CRISPR-associated deaminase in complex cA6 and ATP, fully activated
Raw consensus map of type III CRISPR-associated deaminase in complex cA6 and ATP, fully activated
The structure of type III CRISPR-associated deaminase in complex cA6 and ATP, fully activated
Focused map for area 1 of type III CRISPR-associated deaminase in complex cA6 and ATP
Focused map for area 2 of type III CRISPR-associated deaminase in complex cA4
The structure of type III CRISPR-associated deaminase in complex cA4
Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in pyraclostrobin-bound state
Nuclear ring segment focused around the basket connection of the Dictyostelium discoideum NPC - hyperosmotic stress
Inner ring segment of the Dictyostelium discoideum NPC - hyperosmotic stress
Cytoplasmic ring segment of the Dictyostelium discoideum NPC - hyperosmotic stress
Inner ring segment of the Dictyostelium discoideum nuclear pore complex
Structure of the Zn(II) triggered TRAP (S33HK35H) protein cage (levo form)
CryoEM structure of recombinant Trypanosoma cruzi apo proteasome 20S subunit
In situ Dictyostelium discoideum 80S ribosome - hypoosmotic stress condition
Cryo-tomogram of Dictyostelium discoideum cell - hyperosmotic stress condition (+0.4 M sorbitol), related to Figure 1b
Inner ring segment of the Dictyostelium discoideum NPC - hypoosmotic stress
Composite structure of the Dictyostelium discoideum nuclear pore complex in cells - hypoosmotic stress
Nuclear ring segment of the Dictyostelium discoideum NPC - control condition
Inner ring segment of the Dictyostelium discoideum NPC - control condition
Lumenal ring segment of the Dictyostelium discoideum NPC - hyperosmotic stress
Composite structure of the Dictyostelium discoideum nuclear pore complex in cells
Cryo-tomogram of Dictyostelium discoideum cell - control condition (HL5), related to Figure 1b
Structure of the Zn(II) triggered TRAP (K35C) protein cage (levo form)
Lumenal ring segment of the Dictyostelium discoideum NPC - control condition
Cryo-tomogram of Dictyostelium discoideum cell - hypoosmotic stress condition (distilled water), related to Figure 1b
Trypanosoma brucei nuclear cap-binding complex (CBC) bound to cap0
Asymmetric subunit of the Dictyostelium discoideum nuclear pore complex - hyperosmotic stress
Nuclear ring segment of the Dictyostelium discoideum NPC - hyperosmotic stress
Lumenal ring segment of the Dictyostelium discoideum NPC - hypoosmotic stress
Trypanosoma brucei nuclear cap-binding complex (CBC) bound to cap4
Structure of a B-state intermediate committed to discard (Bd-I state)
Asymmetric subunit of the Dictyostelium discoideum nuclear pore complex
Nuclear ring segment of the Dictyostelium discoideum NPC - hypoosmotic stress
Cytoplasmic ring segment of the Dictyostelium discoideum nuclear pore complex
Asymmetric subunit of the Dictyostelium discoideum nuclear pore complex - control condition
Cryo-electron microscopy structure of the Chaetomium thermofilum Uba4-Urm1 complex
Cytoplasmic ring segment of the Dictyostelium discoideum NPC - control condition
Composite structure of the Dictyostelium discoideum nuclear pore complex in cells - control condition
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (levo form)
Nuclear ring segment of the Dictyostelium discoideum nuclear pore complex
Structure of the Zn(II) triggered TRAP (S33HK35H) protein cage (dextro form)
CRYO-EM CONSENSUS MAP OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
Nuclear ring segment focused around the basket connection of the Dictyostelium discoideum NPC - hypoosmotic stress
Cytoplasmic ring segment of the Dictyostelium discoideum NPC - hypoosmotic stress
In situ Dictyostelium discoideum 80S ribosome - hyperosmotic stress condition
Asymmetric subunit of the Dictyostelium discoideum nuclear pore complex - hypoosmotic stress
Structure of the Co(II) triggered TRAP (S33HK35H) protein cage (dextro form)
Structure of the Zn(II) triggered TRAP (K35C) protein cage (dextro form)
CRYO-EM FOCUSED REFINEMENT MAP OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : LM32Cs3H1 sKO STRAIN
Structure of a B-state intermediate committed to discard (Bd-II state)
Nuclear ring segment focused around the basket connection of the Dictyostelium discoideum nuclear pore complex
Lumenal ring segment of the Dictyostelium discoideum nuclear pore complex
Nuclear ring segment focused around the basket connection of the Dictyostelium discoideum NPC - control condition
CryoEM structure of native Trypanosoma cruzi apo proteasome 20S subunit
Composite structure of the Dictyostelium discoideum nuclear pore complex in cells - hyperosmotic stress
The native cardiac thin filament in the calcium bound state in the presence of Lmod2